Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00856 ATGGCAAAAGAGATGATGAAGGGGAGCTGCAAAAAGGGTGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGACGGTGCACTCAAGACTGCGTTTTTGCTCCTTATTTCCCAGCGGATCAGCCCCACAAATTCTCCAGTGTTCACAAGGTGTTTGGAGCTAGCAACGTCACCAAATTGTTGCAGGAGTTACCCGAGCAACACCGGAGCGACGCAGTGAGTTCATTGGTGTACGAGGCGAATGCGAGGATTCGAGACCCAATTTACGGGTGTGTGGGAACAATATCGTGCCTACAACGACAAGTAGATGCGCTACAACAACAATTGGCGATGACACAAGCCCAGCTGCTTCATTTCAAAATGGCCCAATTTTCTTTGGCATCACAACCATCGTCCACTGATGATGTCCTCCCTTCGCCGCCCAATACCAATGTGCCCTCATTCACCTCCTTGTGA 459 51.63 MAKEMMKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSLVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQFSLASQPSSTDDVLPSPPNTNVPSFTSL 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7887266 7888292 + Cp4.1LG04g02270.1 Cpe04g00856 468418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00856 152 Coils Coil 96 116 - -
Cpe04g00856 152 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 133 - -
Cpe04g00856 152 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 133 - -
Cpe04g00856 152 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cpe04g00856 152 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cpe04g00856 152 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00856 Cpe-Chr4:7887266 Cpe05g00986 Cpe-Chr5:6418129 2.85E-53 dispersed
Cpe05g01423 Cpe-Chr5:9959714 Cpe04g00856 Cpe-Chr4:7887266 9.67E-24 transposed
Cpe05g01559 Cpe-Chr5:10711597 Cpe04g00856 Cpe-Chr4:7887266 8.27E-67 transposed
Cpe20g00593 Cpe-Chr20:3637867 Cpe04g00856 Cpe-Chr4:7887266 1.51E-61 transposed
Cpe15g00887 Cpe-Chr15:8564234 Cpe04g00856 Cpe-Chr4:7887266 2.72E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49381 PF03195 LOB 2.00E-43 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00856 - - csv:101213100 236.498