Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00858 ATGGAAAGCACAGGGCACAGGGATATTCTCGACAATACGGCCATTGCCATAGATCCGCTTCCATCTCGGTTTAGCCAAAACCGGCGCCTTCCCTCCAACTTCATCTCTGTGATCGCTCTTCTTCTACCGATAGCTCCCCAATCTGCGGAGGGAGGAGGACAGAAAGCGGAAGCCATGTCTGTGCTCATTGTAACTAGTTTGGGGGACATTGTGATCGACCTTCACACCGACATGTGCCCCTTGACCTCCAAGAATTTCTTGAAGCTCTGCAAGATTAAGTACTACAATGGCTGTCTATTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCATTGGGACTGGTGGTGACTCAATCTACAAATTTCTATATGGGGACCAGGCTCGATTCTTCAATGACGAGATTCATCTCGATTTAAAGCACTCTAAGACTGGCACAGTGGCAATGGCTAGTGCTGGAGAAAATCTTAATGCTTCTCAGTTCTATTTCACTTTGCGTGATGATCTTGAGTATCTTGATGGCAAGCACACTGTTGTTGATGAGGTGCGACTGGAAGATGATTGGGTGCCACTGGATGAGCAATTGGGCCCATCGGAACTTGAGGAGGTCTTTCGTGCAAAAGAAGCTCACTCTAGGGCTGTTGTGCTTGAAACTATTGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAATGTGTTATTTGTTTGTAAATTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCCCGTTTTGGCACTGTGTTATCGGCTGAAGTTATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACAAAAGAGGCATGTGAACAAGCGTATTTTAAGATGGACAATGCTTTGATTGATGATAGAAGGATACATGTGGACTTCAGTCAAAGTGTTGCAAAACTATGGTCCCAATACCGGCGGAAAGATTACTCAACGGATAAAGGAAGAGGCTGCTTTAAATGTGGCGCTCCCGATCACATGGCCAAGGATTGCACTGGTGGATCTGAAAAGTTCATCTTGAAGGACGATAACATCCAGCATGGTGGAAATGAATCAAGGTATGACTTTGTATTTGATGAGGACAATGGAAGTAACCATAGGAAAGAAAAGAGACATCGAGATCATGGTAAAGATAAGCATGTTGAGAGGTCTAGAAAGCAAAGCCCCAATGATCGTGATCATTATGCAGAAAAGAAGGGAGAAAATGATAGGCATGAATCAAGTGACAGAAATAGATACAGGGAGAGAGAGATGCATCGGGAAAATAAAGCAAGACAATCCAGTGGATACAGAGGAGACAGGGATGACTTTGAAGACCGAAGGGACCATGAAAAACGAAGGAAGAGACAGAGTGACCGGGATGACGACAGGAAAAAGGAGTTGGATTATCAAAGAAGAGCTTCACATGATAATGACGCTTATGACAAGAGGGATTATGAGGCTAATAGAAATAGAAGCAGAAGGGAAGATAGCGACAAGTCAGAAAGGAGGAAGGATGAAGAGACTTATGGCAGAAGGCATTCTGATAAGAGTAGCCATGAAGAGAAAAGGTACGAGGGAGATGGTAGAAGGAGAAGTACAGATGATGGTCGAGAATATAGGAAGGATGAAAGAAGTTATGGGAAAAAAAGAGATTCAGACGGTGACAAAGCAGAGATGAAAGACGGGTCTCATTATAAGAAAAGATATAATACAGTTGATGATGGTTACAAGGACAGGAGAGACGAGCGAGAACCCAAAAGACGAAGCAAGGAAGAGTACAAGGAAAGATAA 1827 43.62 MESTGHRDILDNTAIAIDPLPSRFSQNRRLPSNFISVIALLLPIAPQSAEGGGQKAEAMSVLIVTSLGDIVIDLHTDMCPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGIGTGGDSIYKFLYGDQARFFNDEIHLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVVDEVRLEDDWVPLDEQLGPSELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYSTDKGRGCFKCGAPDHMAKDCTGGSEKFILKDDNIQHGGNESRYDFVFDEDNGSNHRKEKRHRDHGKDKHVERSRKQSPNDRDHYAEKKGENDRHESSDRNRYREREMHRENKARQSSGYRGDRDDFEDRRDHEKRRKRQSDRDDDRKKELDYQRRASHDNDAYDKRDYEANRNRSRREDSDKSERRKDEETYGRRHSDKSSHEEKRYEGDGRRRSTDDGREYRKDERSYGKKRDSDGDKAEMKDGSHYKKRYNTVDDGYKDRRDEREPKRRSKEEYKER 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7892184 7909984 + Cp4.1LG04g02310.1 Cpe04g00858 468420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00858 608 Gene3D - 334 406 - -
Cpe04g00858 608 ProSiteProfiles Zinc finger CCHC-type profile. 336 349 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 185 486 IPR035542 -
Cpe04g00858 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 59 188 IPR035542 -
Cpe04g00858 608 Gene3D - 229 333 IPR012677 -
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 165 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 74 89 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 MobiDBLite consensus disorder prediction 372 608 - -
Cpe04g00858 608 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 187 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 CDD cyclophilin_RRM 62 187 IPR035538 -
Cpe04g00858 608 CDD RRM_PPIL4 234 316 - -
Cpe04g00858 608 Pfam Zinc knuckle 334 350 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Cpe04g00858 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 309 IPR000504 GO:0003723
Cpe04g00858 608 SMART rrm1_1 238 311 IPR000504 GO:0003723
Cpe04g00858 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Cpe04g00858 608 Gene3D - 46 222 IPR029000 -
Cpe04g00858 608 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 65 226 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 SMART c2hcfinal6 335 351 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 MobiDBLite consensus disorder prediction 398 608 - -
Cpe04g00858 608 SUPERFAMILY Cyclophilin-like 59 187 IPR029000 -
Cpe04g00858 608 MobiDBLite consensus disorder prediction 372 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00858 K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] - csv:101212221 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00858 Cpe-Chr4:7892184 Cpe08g00998 Cpe-Chr8:7735065 9.16E-27 dispersed
Cpe04g00858 Cpe-Chr4:7892184 Cpe03g00282 Cpe-Chr3:1446526 3.90E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009344 0 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00858 Cpe_Chr04 FPKM 0.0 0.289914 0.212144 0.092317 1.042826 0.835193 0.589449 0.0 0.0 0.0