Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00858 ATGGAAAGCACAGGGCACAGGGATATTCTCGACAATACGGCCATTGCCATAGATCCGCTTCCATCTCGGTTTAGCCAAAACCGGCGCCTTCCCTCCAACTTCATCTCTGTGATCGCTCTTCTTCTACCGATAGCTCCCCAATCTGCGGAGGGAGGAGGACAGAAAGCGGAAGCCATGTCTGTGCTCATTGTAACTAGTTTGGGGGACATTGTGATCGACCTTCACACCGACATGTGCCCCTTGACCTCCAAGAATTTCTTGAAGCTCTGCAAGATTAAGTACTACAATGGCTGTCTATTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCATTGGGACTGGTGGTGACTCAATCTACAAATTTCTATATGGGGACCAGGCTCGATTCTTCAATGACGAGATTCATCTCGATTTAAAGCACTCTAAGACTGGCACAGTGGCAATGGCTAGTGCTGGAGAAAATCTTAATGCTTCTCAGTTCTATTTCACTTTGCGTGATGATCTTGAGTATCTTGATGGCAAGCACACTGTTGTTGATGAGGTGCGACTGGAAGATGATTGGGTGCCACTGGATGAGCAATTGGGCCCATCGGAACTTGAGGAGGTCTTTCGTGCAAAAGAAGCTCACTCTAGGGCTGTTGTGCTTGAAACTATTGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAATGTGTTATTTGTTTGTAAATTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCCCGTTTTGGCACTGTGTTATCGGCTGAAGTTATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACAAAAGAGGCATGTGAACAAGCGTATTTTAAGATGGACAATGCTTTGATTGATGATAGAAGGATACATGTGGACTTCAGTCAAAGTGTTGCAAAACTATGGTCCCAATACCGGCGGAAAGATTACTCAACGGATAAAGGAAGAGGCTGCTTTAAATGTGGCGCTCCCGATCACATGGCCAAGGATTGCACTGGTGGATCTGAAAAGTTCATCTTGAAGGACGATAACATCCAGCATGGTGGAAATGAATCAAGGTATGACTTTGTATTTGATGAGGACAATGGAAGTAACCATAGGAAAGAAAAGAGACATCGAGATCATGGTAAAGATAAGCATGTTGAGAGGTCTAGAAAGCAAAGCCCCAATGATCGTGATCATTATGCAGAAAAGAAGGGAGAAAATGATAGGCATGAATCAAGTGACAGAAATAGATACAGGGAGAGAGAGATGCATCGGGAAAATAAAGCAAGACAATCCAGTGGATACAGAGGAGACAGGGATGACTTTGAAGACCGAAGGGACCATGAAAAACGAAGGAAGAGACAGAGTGACCGGGATGACGACAGGAAAAAGGAGTTGGATTATCAAAGAAGAGCTTCACATGATAATGACGCTTATGACAAGAGGGATTATGAGGCTAATAGAAATAGAAGCAGAAGGGAAGATAGCGACAAGTCAGAAAGGAGGAAGGATGAAGAGACTTATGGCAGAAGGCATTCTGATAAGAGTAGCCATGAAGAGAAAAGGTACGAGGGAGATGGTAGAAGGAGAAGTACAGATGATGGTCGAGAATATAGGAAGGATGAAAGAAGTTATGGGAAAAAAAGAGATTCAGACGGTGACAAAGCAGAGATGAAAGACGGGTCTCATTATAAGAAAAGATATAATACAGTTGATGATGGTTACAAGGACAGGAGAGACGAGCGAGAACCCAAAAGACGAAGCAAGGAAGAGTACAAGGAAAGATAA 1827 43.62 MESTGHRDILDNTAIAIDPLPSRFSQNRRLPSNFISVIALLLPIAPQSAEGGGQKAEAMSVLIVTSLGDIVIDLHTDMCPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGIGTGGDSIYKFLYGDQARFFNDEIHLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVVDEVRLEDDWVPLDEQLGPSELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYSTDKGRGCFKCGAPDHMAKDCTGGSEKFILKDDNIQHGGNESRYDFVFDEDNGSNHRKEKRHRDHGKDKHVERSRKQSPNDRDHYAEKKGENDRHESSDRNRYREREMHRENKARQSSGYRGDRDDFEDRRDHEKRRKRQSDRDDDRKKELDYQRRASHDNDAYDKRDYEANRNRSRREDSDKSERRKDEETYGRRHSDKSSHEEKRYEGDGRRRSTDDGREYRKDERSYGKKRDSDGDKAEMKDGSHYKKRYNTVDDGYKDRRDEREPKRRSKEEYKER 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7892184 7909984 + Cp4.1LG04g02310.1 Cpe04g00858 468420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00858 608 Gene3D - 334 406 - -
Cpe04g00858 608 ProSiteProfiles Zinc finger CCHC-type profile. 336 349 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 185 486 IPR035542 -
Cpe04g00858 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 59 188 IPR035542 -
Cpe04g00858 608 Gene3D - 229 333 IPR012677 -
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 165 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 74 89 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 MobiDBLite consensus disorder prediction 372 608 - -
Cpe04g00858 608 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 187 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 CDD cyclophilin_RRM 62 187 IPR035538 -
Cpe04g00858 608 CDD RRM_PPIL4 234 316 - -
Cpe04g00858 608 Pfam Zinc knuckle 334 350 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Cpe04g00858 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 309 IPR000504 GO:0003723
Cpe04g00858 608 SMART rrm1_1 238 311 IPR000504 GO:0003723
Cpe04g00858 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Cpe04g00858 608 Gene3D - 46 222 IPR029000 -
Cpe04g00858 608 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 65 226 IPR002130 GO:0000413|GO:0003755
Cpe04g00858 608 SMART c2hcfinal6 335 351 IPR001878 GO:0003676|GO:0008270
Cpe04g00858 608 MobiDBLite consensus disorder prediction 398 608 - -
Cpe04g00858 608 SUPERFAMILY Cyclophilin-like 59 187 IPR029000 -
Cpe04g00858 608 MobiDBLite consensus disorder prediction 372 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00858 Cpe-Chr4:7892184 Cpe08g00998 Cpe-Chr8:7735065 9.16E-27 dispersed
Cpe04g00858 Cpe-Chr4:7892184 Cpe03g00282 Cpe-Chr3:1446526 3.90E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00858 K12735 - csv:101212221 754.207