Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00865 ATGGCCGTACCGTCGCTCTTCAGATCTGCACCCGCTGCTTCTTTTCTTCAAGCGTCGCTTCCTCTCTCTTCTGCCGATCACCCTACGGCTTCGTGCGTTAATTTGAGTTCCTCCAAGTTTCAATCCAGCATTTTCGTTGCTCATGTTTCAAGCGGATCATCTTCCTTTCAGCTTCGTACACCCCACAATATTCAACCTATTAAAGCTACAGCTATTGAAATACCTCCCGCAGTTCGTAAATCGAGCAGCGGTGGAAAGACGAAGATCGGAATCAATGGTTTTGGACGCATTGGAAGATTGGTGTTACGAATTGCAACCTTGAGGGATGATATTGATGTAGTTGCAGTTAATGACCCTTTTGTTGATGCAAAGTACATGGCATACATGTTCAAATTTGATTCTACACATGGTAATTTTAATGGTACAATTAACGTTGTGGATGATTCAACTTTGGAAATCAATGGGAAACAAATAAAAGTTTCAAGTAAAAGGGATCCGGCAGAAATTCCTTGGGGTCAATTAGGGGTCGAGTTTGTTGTTGAATCCTCTGGGGTTTTCACAACGACAAATAAGGCATCAGCGCACTTGAAGGGTGGAGCCAGGAAAGTTGTCATATCAGCTCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGAAGACATATAAGCCAAACATGGATATTGTTTCAAATGCAAGCTGTACCACGAATTGTCTTGCTCCTATTGCGAAGGTGGTTCATGAGGTTTTTGGTATCGCAGAAGGTTTGATGACAACCGTGCATGCAACCACAGCTACTCAAAAGACTGTTGATGGTCCCTCAATGAAGGATTGGCGTGGGGGTCGAGGAGCTTCCCAAAATATCATTCCGAGCTCTACTGGTGCTGCGAAGGCCGTGGGAAAGGTTCTTCCTGAGCTCAACGGAAAACTTACAGGAATGGCATTTCGTGTTCCAACTCCTAATGTATCCGTTGTGGACTTGACTTGTAGACTAGAGAGGAGTGCTTCTTATGAAGATGTAAAAGCTGCAATCAAGTATGCCTCAGAAGGCCCACTCAAGGGTATCATTGGTTACACGGATGAGGACGTTGTCTCCAATGATTTTGTTGGTGATTCAAGGTCCAGCATATTCGATGCAAAGGCCGGAATAGGTCTCAGCCACTCCTTCATGAAGCTTATCTCCTGGTATGACAACGAGTGGGGATACAGCAATCGAGTGCTGGACCTCATTGAGCACATGGCATTGGTGGCTGCCAACGCGTGA 1269 45.15 MAVPSLFRSAPAASFLQASLPLSSADHPTASCVNLSSSKFQSSIFVAHVSSGSSSFQLRTPHNIQPIKATAIEIPPAVRKSSSGGKTKIGINGFGRIGRLVLRIATLRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFNGTINVVDDSTLEINGKQIKVSSKRDPAEIPWGQLGVEFVVESSGVFTTTNKASAHLKGGARKVVISAPSADAPMFVVGVNEKTYKPNMDIVSNASCTTNCLAPIAKVVHEVFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLERSASYEDVKAAIKYASEGPLKGIIGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSHSFMKLISWYDNEWGYSNRVLDLIEHMALVAANA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7943557 7947361 + Cp4.1LG04g02290.1 Cpe04g00865 468427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00865 422 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 421 - -
Cpe04g00865 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 252 IPR036291 -
Cpe04g00865 422 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 421 IPR020831 GO:0016620
Cpe04g00865 422 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 234 241 IPR020830 GO:0016620
Cpe04g00865 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 188 IPR020828 GO:0051287
Cpe04g00865 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 235 398 - -
Cpe04g00865 422 Gene3D Dihydrodipicolinate Reductase; domain 2 236 402 - -
Cpe04g00865 422 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 88 410 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cpe04g00865 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620
Cpe04g00865 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 248 IPR020831 GO:0016620
Cpe04g00865 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 257 273 IPR020831 GO:0016620
Cpe04g00865 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 331 IPR020831 GO:0016620
Cpe04g00865 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 354 369 IPR020831 GO:0016620
Cpe04g00865 422 Gene3D - 88 415 - -
Cpe04g00865 422 SMART gp_dh_n_7 87 236 IPR020828 GO:0051287
Cpe04g00865 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 241 398 IPR020829 GO:0016620
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00865 Cpe15g00903 CCT
Cpe04g00865 Cpe05g01033 CCT
Cpe04g00865 Cpe16g00709 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00865 Cpe-Chr4:7943557 Cpe05g01033 Cpe-Chr5:6773286 0 dispersed
Cpe15g00903 Cpe-Chr15:8679143 Cpe04g00865 Cpe-Chr4:7943557 0 wgd
Cpe16g00709 Cpe-Chr16:7255572 Cpe04g00865 Cpe-Chr4:7943557 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00865 K00134 - csv:101215988 744.191