Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00866 ATGCATAAATTAAGCAGAGGACACCGAGACAAACTCCAACAGTTTATGGCCATAACTGGTACAAGTGAAAAGGTTGCTCACCAGGCCCTGAAGGCTAGTGAGTGGCATCTTGAAGGAGCTATTGATGTGTTTTACAGTCAACCCCTAATTAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTTTATAGCAGATATAAAGGCAAGATTTATATTCGTTTATCATTACTAGATTTCTTTTCTTTCTATCCATATGTTGACATGATATTGGCTGATGGTATCTCACTGCTCTGCAATGACCTTCAGGTGGATCCTCAAGATATAGTTATGTTGGTTGTTTCTTGGCATATGAAGGCGAACACAATGTGTGAATTTTCCAAACAGGAATTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCAGAGAAAGGATACCATATATGCGCTCTGAGTTGAAAGACGAACATAAGTTTCGTGATATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAGAAATCCTTAGCATTGGACACTGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCCTCTGGTTGACCACTGGTGTCAGTTCTTGCAGGCTCGGCATAATAAAGCTATTTCTAGGGACACGTGGTCTCAGCTTCTGGAGTTTGCAAGGACTGTGGATCCTACACTATCAAATTACGATGCCGAAGGTGCATGGCCATACCTCATCGATGAATTTGTTGAATACCTGAACGAGAATGGCATAATCCATGGTGGTCAACCGAATGATTCGAGTCAAGTAAGATGA 825 41.58 MHKLSRGHRDKLQQFMAITGTSEKVAHQALKASEWHLEGAIDVFYSQPLIKAFTDSRHLEELYSRYKGKIYIRLSLLDFFSFYPYVDMILADGISLLCNDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDEHKFRDIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQARHNKAISRDTWSQLLEFARTVDPTLSNYDAEGAWPYLIDEFVEYLNENGIIHGGQPNDSSQVR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7949711 7954254 - Cp4.1LG04g02200.1 Cpe04g00866 468428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00866 274 Pfam UBA-like domain 9 47 - -
Cpe04g00866 274 ProSiteProfiles DCUN1 domain profile. 54 257 IPR005176 -
Cpe04g00866 274 Gene3D - 5 47 - -
Cpe04g00866 274 Gene3D - 55 157 - -
Cpe04g00866 274 Gene3D Cullin, PONY binding domain 158 263 IPR042460 -
Cpe04g00866 274 PANTHER RP42 RELATED 14 263 IPR014764 -
Cpe04g00866 274 SUPERFAMILY UBA-like 5 46 IPR009060 GO:0005515
Cpe04g00866 274 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 14 263 - -
Cpe04g00866 274 CDD UBA_DCNL 8 48 - -
Cpe04g00866 274 Pfam Cullin binding 146 255 IPR005176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00866 K17822 DCUN1D1_2; DCN1-like protein 1/2 - csv:101216476 488.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00866 Cpe15g00904 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02395 Cpe-Chr1:19997270 Cpe04g00866 Cpe-Chr4:7949711 1.32E-20 transposed
Cpe15g00904 Cpe-Chr15:8683531 Cpe04g00866 Cpe-Chr4:7949711 7.95E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00866 Cpe_Chr04 FPKM 33.413406 33.042732 72.104294 74.893776 46.212147 46.025742 53.977085 45.157169 44.190407 61.529694