Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00872 ATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTTTGACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCAGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAAATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTCGCGATGTTAGGAGCCGCTGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGCTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTTTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGGAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCACTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTCAAGTTCCACTAG 810 50.0 MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8010354 8012508 + Cp4.1LG04g12530.1 Cpe04g00872 468434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00872 269 Pfam Chlorophyll A-B binding protein 65 238 IPR022796 -
Cpe04g00872 269 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 268 - -
Cpe04g00872 269 SUPERFAMILY Chlorophyll a-b binding protein 65 265 - -
Cpe04g00872 269 Gene3D Chlorophyll a/b binding protein domain 58 268 - -
Cpe04g00872 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 268 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00872 Cpe-Chr4:8010354 Cpe07g00484 Cpe-Chr7:3138252 9.93E-50 dispersed
Cpe18g00215 Cpe-Chr18:3779146 Cpe04g00872 Cpe-Chr4:8010354 1.66E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00872 K08909 - csv:101202993 508.064