Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00890 ATGTGGCCCTCCTCCTCCTCCTCCAGACCTATTGCTGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAGTGTCGGAATTGAAGAGACTAATTTGATGATCAGCCGCGGCGGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGTCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCCGCTGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGATATGAGTTATAAAAGGGCGAAGAAGCTGCCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTAGCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTGTATGGAAGCTCCGCCGGGCGCGGTGGAGGACTGGCTGGGGGTTCCGGCTATGGTAATCCAATAAGTTGA 942 56.58 MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSDMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8146991 8148808 - Cp4.1LG04g12290.1 Cpe04g00890 468452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00890 313 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 100 142 IPR006510 -
Cpe04g00890 313 MobiDBLite consensus disorder prediction 275 313 - -
Cpe04g00890 313 Pfam Domain of unknown function (DUF702) 100 259 - -
Cpe04g00890 313 MobiDBLite consensus disorder prediction 155 193 - -
Cpe04g00890 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 89 312 IPR007818 GO:0003700|GO:0006355
Cpe04g00890 313 MobiDBLite consensus disorder prediction 151 193 - -
Cpe04g00890 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 89 312 - -
Cpe04g00890 313 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 208 258 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00890 Cpe05g00477 CCT
Cpe04g00890 Cpe16g00860 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00357 Cpe-Chr3:1888372 Cpe04g00890 Cpe-Chr4:8146991 1.43E-51 dispersed
Cpe04g00890 Cpe-Chr4:8146991 Cpe09g00448 Cpe-Chr9:2889169 1.06E-52 dispersed
Cpe16g00860 Cpe-Chr16:8171896 Cpe04g00890 Cpe-Chr4:8146991 2.20E-68 wgd
Cpe04g00890 Cpe-Chr4:8146991 Cpe05g00477 Cpe-Chr5:2788710 1.38E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49384 PF05142 DUF702 1.80E-57 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00890 - - cmax:111472747 528.48