Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00904 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCTTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCTCCTAAACTGGGCTCTCCATATCCATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGCTTGTATTTGATCCATTTGTTGCTTACTTGTGCTAACCATGTGGCTGTTGGTAGCCTTGACAATGCTAATCTTGCTCTTGATCAGATATCCCATCTTGCTTCTGCTGATGGCGATACAATGCAGCGGATAGCAGCGTATTTCGCCGAGGCTCTCGCCGATCGAATCCTTAAAACTTGGCCTGGCCTTTATAAGGCCTTTAACTCCACAAAGATACCTGTGGTTTCAGAGGAGATTCTTGTTAAGAAGCTGTTTTTTGAGGTGTTTCCATTCCTCAAGGTGGCTATTGTGCTTACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATCATTGATCTCAATGCCAATGAAACTGCTCAATGGCTTGCACTTTTGCAAGTTTTGAGTGTCAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCAACAGAAACAGGTTCTGGATCGAATGGCTCGTCGGCTGACCGAAGAAGCTGAAAAGTTTGATATCCCGTTTCGATTCGATTCGGTCGTGTGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACAGGGGAGGCTCTGGCTATCAGCTCAGTTCTTCAGTTGCATACCCTTTTGGCAGCTGATAATGAAGTCCTGCAAAAGTCATCTCCATTAGCAGGAAAGAGTGCCAATGGAGTTCATTACTCGAGATACCAGCACCCGAACCAAACCGCCTTGAGTGAGTTACTCGAAAAGGATTCGGTTAACGGGTGCAGTCCGAGTCCCGATTCAGTATCTTCATCAGCATTATCTCAAGCCAACGTGACGAAGATCGACAGCTTCTTGAATGGATTGTGGAGTTTGACGCCGAAGGTGATGGTCGTAACCGAACAAGATTCTAACCATAATGGTGCAACACTTATGGAGAGATCACTAGAGGCTCTCCACACATATGCAGCAATCTTTGATTGCTTGGAATCTAATATGTCAAGAACATCCCTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGGTGAAAGGAAGGAACGACACGAGAAGCGTGAGAAATGGAGTCAACGGTTCGATCTCGCGGGGTTCAGGCATGTGCCTTTGAGTTATTATGGCATGTTGCAGGCAAGGAGCCTGCTGCAGGGGTATGGTTGTGATGGTTATAAGCTGAAGGAAGAGAATGGTTGTGTTATGATTTGTTGGCAAGATCGTTCGTTGTTCTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 45.62 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPVVSEEILVKKLFFEVFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHQQKQVLDRMARRLTEEAEKFDIPFRFDSVVCRLEDLDMEKLRVKTGEALAISSVLQLHTLLAADNEVLQKSSPLAGKSANGVHYSRYQHPNQTALSELLEKDSVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGFRHVPLSYYGMLQARSLLQGYGCDGYKLKEENGCVMICWQDRSLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8239401 8240816 + Cp4.1LG04g12230.1 Cpe04g00904 468466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00904 471 Pfam GRAS domain family 46 468 IPR005202 -
Cpe04g00904 471 PANTHER SCARECROW-LIKE PROTEIN 3 2 470 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cpe04g00904 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 470 IPR005202 -
Cpe04g00904 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00904 Cpe-Chr4:8239401 Cpe01g02589 Cpe-Chr1:21009953 7.77E-82 dispersed
Cpe09g00431 Cpe-Chr9:2748909 Cpe04g00904 Cpe-Chr4:8239401 0 transposed
Cpe18g00182 Cpe-Chr18:3426105 Cpe04g00904 Cpe-Chr4:8239401 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49385 PF03514 GRAS 1.00E-137 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00904 - - csv:101215435 823.928