Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00917 ATGCAGTCGAAATCCGAAACCAATAGTCAGTTTGAATCTGATCCAAACGGTACTCCGTCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAATCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCGCTAATGGTGGTTCAGAGTCAAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAATCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCCTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGAGCAAAAGCCGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGTGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG 813 45.63 MQSKSETNSQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFANGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8349277 8354071 - Cp4.1LG04g12030.1 Cpe04g00917 468479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00917 270 MobiDBLite consensus disorder prediction 211 226 - -
Cpe04g00917 270 MobiDBLite consensus disorder prediction 252 270 - -
Cpe04g00917 270 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 MobiDBLite consensus disorder prediction 211 270 - -
Cpe04g00917 270 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 MobiDBLite consensus disorder prediction 227 251 - -
Cpe04g00917 270 MobiDBLite consensus disorder prediction 42 72 - -
Cpe04g00917 270 Gene3D - 172 234 - -
Cpe04g00917 270 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 258 - -
Cpe04g00917 270 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 229 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 258 IPR001289 GO:0003700|GO:0006355
Cpe04g00917 270 MobiDBLite consensus disorder prediction 1 22 - -
Cpe04g00917 270 MobiDBLite consensus disorder prediction 83 98 - -
Cpe04g00917 270 MobiDBLite consensus disorder prediction 39 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00917 Cpe18g00169 CCT
Cpe04g00917 Cpe05g00493 CCT
Cpe04g00917 Cpe18g00169 ECH
Cpe04g00917 Cpe05g00493 ECH
Cpe04g00917 Cpe16g00877 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00917 Cpe-Chr4:8349277 Cpe17g00690 Cpe-Chr17:5519163 1.23E-50 dispersed
Cpe16g00877 Cpe-Chr16:8298473 Cpe04g00917 Cpe-Chr4:8349277 1.93E-102 wgd
Cpe18g00169 Cpe-Chr18:3291582 Cpe04g00917 Cpe-Chr4:8349277 3.27E-164 wgd
Cpe04g00917 Cpe-Chr4:8349277 Cpe05g00493 Cpe-Chr5:2909784 8.53E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49387 PF02045 CBFB_NFYA 4.40E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00917 K08064 - csv:101212860 457.988