Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00940 ATGGAAGACGAAGCATCCTCCACCTTCATTTCCTTCACTAAGTCCCCTCTCCTCATAGATGAAGTTTCTGATTCTAATTTCTCAGATTATGCCATACCTGATGCCAAGCGGATGAGATTAGACCATGATCTTAATGATGTAGCCACCGTCGAGAAATTTAAAGGTGTAGTGCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTATGCGAACCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAAAGACGCTGCCATGGCTTATGACAGTGCCGCTATCAAGCTTCGCACCAGAGACTCTCACCGGAATTTCCCATGGACTCGCCTATCAATCGAGGAGCCGAATTTTCAAAGCAAATTCTCCATAGACGCCGTTCTCAGCATGATCAAAGACGGATCGTATTCCTCAAAATTTTCCGCCTACTTACGAACGAAGTCTCAAATTTGCGACTCGAATATACAGAACCTCCAAACTATTGAAAATGGCGACCGCGATGGCCATTTCTCTTGCAGCCATCTATTCCAGAAGGAATTAACACCAAGCGACGTCGGAAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCGTACATCAGCGAGAGCGCAGAGGAGAATAACGACGATATCGAAATCGTCTTCTACGATACATCAATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAAGAGAAAAAGCTGAAGGCGAACGACATCATCACGTTTTACACATACGAAAGCTGCGGAAGAGACAAAAATGGCGGAACATTGATTTTCATTGACGTAATCTACAAGAAACCGGAAGATGATCGGAGCGAGAGTAGTTGCTTAGCGGCGGAGAGAGAGAGTATCAAGAACGAACAATTGCAGAGAGAATTAGGGCTTGATCGGGAGGACTGTGAGGGGAAGAAGAAGAAGAAGAAGAAGGAGGAAGAGGAGGAGATTTTAAAGCGTGAAAAATTAAACCCTATTAGCCAAAATGTTGGGCAAAAGCGAATTAGATTGAATAAGACAACATTTAAGATTCCAAAATGTTTGGAAGATTCCCACAATATTGGAATAACATCATATTCAAAAACAAAATTCCCGACAGTTTTAGGCTCTCTATTGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCAATGGCCAAAGAACAACTTTCTGAAAGCAGCCGACCTACCAACAATGGCTTCCCAACTGTTCAATTAATCACAAATTCATTATCCGCCGTCTTCTTTAACAACCTTTTTCTTCATCTTTTCCATGGACACTTCTTCACCACTCTTCAAAACCCAATCAATTTCTTCTCCTCCTCTTCGCGTTTCATCCAAGGCCCGCTCGATCTTGTTGCAGTATCCATTGCCGCGCTCTCTCCGGCGCCAAGAAATCTGAATTCCATCACTTTATCTTCTACAAGAACAGGGAAGATTGCAACTAGAGCTATGTCTGGATCTAATGAACACCAACCAGTCTCTGGGTTGCCGATTGATTTAAGAGGTAAGCGGGCATTCATTGCTGGTGTAGCTGATGACGATGGTTATGGTTGGGCAATAGCAAAATCTCTTGCTGCTGCCGGAGCTGAAATCATTGTTGGTACGTGGGTGCGTGAGGTAGCAGAATCAGTTAAGAAGGATTTTGGAAGCATTGACATCCTTGTGCATTCAATTGCAAATGGACCAGAGGTAAGTAAACCTCTCTTAGAGACCTCCAGGAAAGGCGGTTCGTCGATCTCTCTTACATACATTGCTTCCAAAAGGATCATTCCTGGATATGGGGGAGGTATGAGTTCAGCAAAAGCTGCACTGGAGAGTGACATACGAGTGCTTGCTTTCGAGGTGGGTAGAAAAAACAAGATCAGAGTGAACGCCATATCCGCTGGTAGCTTCAATGAGTCAACTCGGAAAACTGCAGTTTATCTTTACAGTTTAGGATCATCTAAGCTCTTCTGA 2046 44.18 MEDEASSTFISFTKSPLLIDEVSDSNFSDYAIPDAKRMRLDHDLNDVATVEKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRLSIEEPNFQSKFSIDAVLSMIKDGSYSSKFSAYLRTKSQICDSNIQNLQTIENGDRDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENNDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDKNGGTLIFIDVIYKKPEDDRSESSCLAAERESIKNEQLQRELGLDREDCEGKKKKKKKEEEEEILKREKLNPISQNVGQKRIRLNKTTFKIPKCLEDSHNIGITSYSKTKFPTVLGSLLTSSSSSSSSSSSSSSSSSPSPMAKEQLSESSRPTNNGFPTVQLITNSLSAVFFNNLFLHLFHGHFFTTLQNPINFFSSSSRFIQGPLDLVAVSIAALSPAPRNLNSITLSSTRTGKIATRAMSGSNEHQPVSGLPIDLRGKRAFIAGVADDDGYGWAIAKSLAAAGAEIIVGTWVREVAESVKKDFGSIDILVHSIANGPEVSKPLLETSRKGGSSISLTYIASKRIIPGYGGGMSSAKAALESDIRVLAFEVGRKNKIRVNAISAGSFNESTRKTAVYLYSLGSSKLF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8490907 8496286 - Cp4.1LG04g11940.1 Cpe04g00940 468502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00940 681 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Cpe04g00940 681 Pfam Enoyl-(Acyl carrier protein) reductase 604 662 - -
Cpe04g00940 681 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Cpe04g00940 681 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Cpe04g00940 681 MobiDBLite consensus disorder prediction 394 427 - -
Cpe04g00940 681 Gene3D AP2/ERF domain 51 108 IPR036955 GO:0003700|GO:0006355
Cpe04g00940 681 CDD B3_DNA 174 281 IPR003340 GO:0003677
Cpe04g00940 681 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cpe04g00940 681 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Cpe04g00940 681 SMART B3_2 176 275 IPR003340 GO:0003677
Cpe04g00940 681 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 531 667 IPR036291 -
Cpe04g00940 681 Gene3D - 528 603 - -
Cpe04g00940 681 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Cpe04g00940 681 Gene3D - 604 667 - -
Cpe04g00940 681 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 20 357 - -
Cpe04g00940 681 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Cpe04g00940 681 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 357 IPR044800 GO:0003700
Cpe04g00940 681 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Cpe04g00940 681 Gene3D - 166 291 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00940 Cpe05g00517 CCT
Cpe04g00940 Cpe05g00517 ECH
Cpe04g00940 Cpe16g00903 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00940 Cpe-Chr4:8490907 Cpe04g01246 Cpe-Chr4:10401412 5.55E-101 dispersed
Cpe18g00409 Cpe-Chr18:5283990 Cpe04g00940 Cpe-Chr4:8490907 9.00E-06 dispersed
Cpe16g00903 Cpe-Chr16:8430333 Cpe04g00940 Cpe-Chr4:8490907 1.73E-47 wgd
Cpe04g00940 Cpe-Chr4:8490907 Cpe05g00517 Cpe-Chr5:3068888 1.59E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49390 PF02362 B3 1.70E-26 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00940 K09287 - csv:101219913 560.836