Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00955 ATTCGTCATTCGAGTTCGATTGATTCCTTTTTTTTTGGGGGGGAAATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATTGATTTCCTTTCGGCTCCGATTGTGGAAGGAGATGTGGTAGCTCCACAGGCCGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGACGTCGATGAGCTCGAGAGGAGGATGTGGAAGGATAAGATGCGTCTTAAGCGTCTTAAAGAGCAGAGTAAGGTTAAGGAAGGAGTCGATATTGCGAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCGAGGGCGCACGATGGGATCTTGAAGTATATGTTGAAGATTATGGAGGTTTGTAACGCTCAAGGTTTTGTATATGGAATAATTCCCGAGAAGGGAAAACCGGTAACTGGGGCGTCTGATAATCTTAGAGAATGGTGGAAAGATAAGGTCCGATTTGATAGAAACGGACCAGCTGCCATAGCTAAGTACCAAGCGGATAATGCGATCCCGGGACGAAACGACGGCGAGTATGATGTAGAAGGCGCCGAGGAAGAACCGAACTTCGATGTTCAAGAACGCAAACCCGATAACCATAGCTCATTCAGCTTAGGAATGGAGAGAATGAGAGAACACGTACCCCTTCGACAACCTCCTTATGCAATCAAAGGAGAAGTCGTCGCCACCGCCGCCGCAAACTTGGATTTTATGCGAAAGAGGAAGCCAACGTGCGATCTGAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTCAACGACAGAACGTCGAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCCGAGTTCAGCGGTTCAAATTTTCACGTTAACGAGGTTAAACCAGTTATCTTCCCGCAATCGTTCGCCCCACCCAAACCAGCTCCACCTCCCGTCAGCTCGGTCCCATCTTCCTTCGACTTGTCGAGTTTGGGAGTTCCAGAAGACGGTCAAAAGCACATCAGTGAGCTCATGTCGATCTACAACACGAACATCCAAGGCAACAAGAACAACGTAATCACCATCACAGAGAACCAAAATCAAGGTATAATGATCGACGCTAATTTCTTCGAAGGATCGAGTCTTTCGAGCAGCCATCAAATGTTCACAAGACCGATGAATTCCTCGTTCGAAAACAACCACCAGAACAACAACAACAACAACTTTCACTTGATGTTCGGCTCTCCGTTCGATTTGTCGACGTTCGACTACAAAGAAGAAGTACACGGAGGAGCAGCAGCCATCGACACACTGCCGAAACACCAGGATATTCCGTTATGGTATCAGTAA 1374 46.72 IRHSSSIDSFFFGGEMMMMFNEMGFCDDIDFLSAPIVEGDVVAPQADPEVVVEDDYSDEEIDVDELERRMWKDKMRLKRLKEQSKVKEGVDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGEYDVEGAEEEPNFDVQERKPDNHSSFSLGMERMREHVPLRQPPYAIKGEVVATAAANLDFMRKRKPTCDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKHISELMSIYNTNIQGNKNNVITITENQNQGIMIDANFFEGSSLSSSHQMFTRPMNSSFENNHQNNNNNNFHLMFGSPFDLSTFDYKEEVHGGAAAIDTLPKHQDIPLWYQ 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8670547 8672394 + Cp4.1LG04g11790.1 Cpe04g00955 468517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00955 457 Coils Coil 63 83 - -
Cpe04g00955 457 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 17 182 IPR006957 GO:0005634
Cpe04g00955 457 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 182 456 IPR006957 GO:0005634
Cpe04g00955 457 Gene3D - 96 174 IPR023278 GO:0003700|GO:0005634
Cpe04g00955 457 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 17 182 - -
Cpe04g00955 457 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 182 456 - -
Cpe04g00955 457 MobiDBLite consensus disorder prediction 88 107 - -
Cpe04g00955 457 Pfam Ethylene insensitive 3 64 183 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00955 K14514 EIN3; ethylene-insensitive protein 3 - csv:101206055 405.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00955 Cpe18g00129 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00738 Cpe-Chr1:4294084 Cpe04g00955 Cpe-Chr4:8670547 3.92E-37 dispersed
Cpe04g00955 Cpe-Chr4:8670547 Cpe13g00722 Cpe-Chr13:6655616 1.95E-52 dispersed
Cpe04g00932 Cpe-Chr4:8443381 Cpe04g00955 Cpe-Chr4:8670547 2.95E-51 transposed
Cpe18g00129 Cpe-Chr18:2858931 Cpe04g00955 Cpe-Chr4:8670547 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00738 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.7e-74 276.9
Cpe04g00955 CCT 51 182 EIL Transcription Factor Family AT1G73730 64.9 1.2e-42 171.8
Cpe18g00129 CCT 36 179 EIL Transcription Factor Family AT1G73730 61.0 2.7e-42 170.6
Cpe01g00738 . 18 355 EIL Transcription Factor Family AT5G10120 57.6 5.2e-103 372.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49392 PF04873 EIN3 3.30E-55 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00955 Cpe_Chr04 FPKM 29.515968 30.555847 50.846703 52.382763 40.725693 42.024525 44.034878 79.847198 80.426163 85.636963