Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01014 | ATGGCTTGCGATCCGAACAATGGCGGTGAAATCGGAGCGGAAAATTCTCTCCAATCCATCTGTTACAAACGTGGATCCTTGCGGCTGCTCGATCAGGAAGCTTCCTTTAGAAACTCGCATGCCATAAGGGATATGGTAGTACGCGGGGCGCCTGCCATAGCTATTGCAGCAGCCCTTGCTTTAGCAGCAGAAGTGTACAACTTGGACGCTTTTAATGGGAGTCCCAACGACGCAGCTTCGTTCATTGCGGAGAAATTGGACTACTTAGTCTCCAGTCGGCCAACTGCGGTTAATCTTGGGGACGCTGCTATAAAACTTAAAGAAATTGTATCTCGGGCCGTTGCTATTTCTCCCGATGCCAAGAGTGTCTTTCAAGCATATATTGAGGCTGCTGAAGCGATGCTGGAGGACGACGTTGCTTCAAATAAAGCCATTGGGTCGTATGGAGCAACTCTAGCAACGGCTGGATATGGTACTGCCCTGGGTGTAATCCGTGCTCTTCACTCCGCTGATGTGTTAGAAAGGGCGTACTGTACCGAAACACGACCCTTCAATCAAGGATCTCGACTCACGGCCTACGAGTTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCGGCTGCAGCCGCCTTGATGAAATCTGGAAGGGTGAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCTGCGAACGGTGACACTGCTAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCACCACAACATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTATCCCTTTCATCTGGCGAAGAAATCGTTATCGAGGAAAGGTCCCCCAAAGAGTTGTTGAATGCCCGTGGAGGGCTCGGCGAGCAAGTTGCTGCTTCTGGCATCGATGTCTGGAACCCCGCTTTTGATGTTACTCCTGCTCGTCTGATCTCGGGAATCATTACAGAGAAGGGAGTCATCACGAAGGTGGGTTCTGAAGATTTCAACATAATGGAGTTTGTTCAAAAGATTGCAGCAGGCACTCTTGCGCAGAACACAGGAATCAGATAA | 1065 | 49.3 | MACDPNNGGEIGAENSLQSICYKRGSLRLLDQEASFRNSHAIRDMVVRGAPAIAIAAALALAAEVYNLDAFNGSPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSRAVAISPDAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATLATAGYGTALGVIRALHSADVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKSGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNARGGLGEQVAASGIDVWNPAFDVTPARLISGIITEKGVITKVGSEDFNIMEFVQKIAAGTLAQNTGIR | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9048959 | 9055776 | + | Cp4.1LG04g11240.1 | Cpe04g01014 | 468576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01014 | 354 | TIGRFAM | eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins | 39 | 327 | IPR011559 | GO:0044249 | |
| Cpe04g01014 | 354 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 338 | - | - | |
| Cpe04g01014 | 354 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 16 | 327 | IPR037171 | - | |
| Cpe04g01014 | 354 | TIGRFAM | salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase | 38 | 327 | IPR005251 | - | |
| Cpe04g01014 | 354 | Gene3D | - | 150 | 337 | IPR042529 | - | |
| Cpe04g01014 | 354 | Gene3D | - | 10 | 149 | IPR027363 | - | |
| Cpe04g01014 | 354 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 17 | 336 | IPR005251 | - | |
| Cpe04g01014 | 354 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 338 | - | - | |
| Cpe04g01014 | 354 | Pfam | Initiation factor 2 subunit family | 47 | 326 | IPR000649 | GO:0044237 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g01014 | Cpe-Chr4:9048959 | Cpe13g00487 | Cpe-Chr13:5035859 | 1.04E-14 | dispersed | |
| Cpe18g00310 | Cpe-Chr18:4663078 | Cpe04g01014 | Cpe-Chr4:9048959 | 1.47E-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01014 | K08963 | - | csv:101210526 | 533.487 |