Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01014 ATGGCTTGCGATCCGAACAATGGCGGTGAAATCGGAGCGGAAAATTCTCTCCAATCCATCTGTTACAAACGTGGATCCTTGCGGCTGCTCGATCAGGAAGCTTCCTTTAGAAACTCGCATGCCATAAGGGATATGGTAGTACGCGGGGCGCCTGCCATAGCTATTGCAGCAGCCCTTGCTTTAGCAGCAGAAGTGTACAACTTGGACGCTTTTAATGGGAGTCCCAACGACGCAGCTTCGTTCATTGCGGAGAAATTGGACTACTTAGTCTCCAGTCGGCCAACTGCGGTTAATCTTGGGGACGCTGCTATAAAACTTAAAGAAATTGTATCTCGGGCCGTTGCTATTTCTCCCGATGCCAAGAGTGTCTTTCAAGCATATATTGAGGCTGCTGAAGCGATGCTGGAGGACGACGTTGCTTCAAATAAAGCCATTGGGTCGTATGGAGCAACTCTAGCAACGGCTGGATATGGTACTGCCCTGGGTGTAATCCGTGCTCTTCACTCCGCTGATGTGTTAGAAAGGGCGTACTGTACCGAAACACGACCCTTCAATCAAGGATCTCGACTCACGGCCTACGAGTTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCGGCTGCAGCCGCCTTGATGAAATCTGGAAGGGTGAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCTGCGAACGGTGACACTGCTAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCACCACAACATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTATCCCTTTCATCTGGCGAAGAAATCGTTATCGAGGAAAGGTCCCCCAAAGAGTTGTTGAATGCCCGTGGAGGGCTCGGCGAGCAAGTTGCTGCTTCTGGCATCGATGTCTGGAACCCCGCTTTTGATGTTACTCCTGCTCGTCTGATCTCGGGAATCATTACAGAGAAGGGAGTCATCACGAAGGTGGGTTCTGAAGATTTCAACATAATGGAGTTTGTTCAAAAGATTGCAGCAGGCACTCTTGCGCAGAACACAGGAATCAGATAA 1065 49.3 MACDPNNGGEIGAENSLQSICYKRGSLRLLDQEASFRNSHAIRDMVVRGAPAIAIAAALALAAEVYNLDAFNGSPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSRAVAISPDAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATLATAGYGTALGVIRALHSADVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKSGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNARGGLGEQVAASGIDVWNPAFDVTPARLISGIITEKGVITKVGSEDFNIMEFVQKIAAGTLAQNTGIR 354
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 9048959 9055776 + Cp4.1LG04g11240.1 Cpe04g01014 468576
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01014 354 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 39 327 IPR011559 GO:0044249
Cpe04g01014 354 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 338 - -
Cpe04g01014 354 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 327 IPR037171 -
Cpe04g01014 354 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 38 327 IPR005251 -
Cpe04g01014 354 Gene3D - 150 337 IPR042529 -
Cpe04g01014 354 Gene3D - 10 149 IPR027363 -
Cpe04g01014 354 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 336 IPR005251 -
Cpe04g01014 354 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 338 - -
Cpe04g01014 354 Pfam Initiation factor 2 subunit family 47 326 IPR000649 GO:0044237
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01014 Cpe-Chr4:9048959 Cpe13g00487 Cpe-Chr13:5035859 1.04E-14 dispersed
Cpe18g00310 Cpe-Chr18:4663078 Cpe04g01014 Cpe-Chr4:9048959 1.47E-11 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01014 K08963 - csv:101210526 533.487