Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01028 ATGTGCACCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCCGGCATTCCTATACCTCCTGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTTTTCCCCCACCATCCTCAACATGTAGGGTGGAACTATTTGCAAATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTATCCAGATTCGAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACGACAGCAACAAATGATATTAACCGCCTTTCAAATCCAGCGTTTTCTTCCCTAACCAACAATTCATCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCCTATCACCCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGAAGTAGGGATACTTATGGGCTAAAAGAGAAAGTAGATGAGTATGCCTTCTTCTCACAAGAACCATCTGAAAGTGCTGCAAGAGCCGATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAATAACTGCTCTTCTTTGCAGAATGATCAGTCCTGCTATCAGCTTCACCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGATGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGAGAGGATCACGGCTTGATTTCGAAGATAAATCATCAAATACTGGCTCAGTTTCCACCATTCGGCCCTCAACTTCGATTCCCACCACTTCCAACGACTTCCCCATTTTCGGATTCAACAACCCATAA 978 44.17 MCTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINRLSNPAFSSLTNNSSLLSYRPFPAHQISSTSNGNGLSPQDTNTLLLLESGSYSDRNPDYRRSRDTYGLKEKVDEYAFFSQEPSESAARADSLQLTPLTMSCSSLYPKQNNCSSLQNDQSCYQLHQSLTDPLKQQKRDESQKTVHRFFDEWPPKERGSRLDFEDKSSNTGSVSTIRPSTSIPTTSNDFPIFGFNNP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9123274 9125619 + Cp4.1LG04g10970.1 Cpe04g01028 468590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01028 325 PANTHER - 149 297 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe04g01028 325 PANTHER - 3 171 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe04g01028 325 MobiDBLite consensus disorder prediction 293 310 - -
Cpe04g01028 325 Pfam WRC 77 118 IPR014977 -
Cpe04g01028 325 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe04g01028 325 PANTHER GROWTH-REGULATING FACTOR 5 149 297 - -
Cpe04g01028 325 PANTHER GROWTH-REGULATING FACTOR 5 3 171 - -
Cpe04g01028 325 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe04g01028 325 MobiDBLite consensus disorder prediction 284 310 - -
Cpe04g01028 325 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe04g01028 325 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01028 Cpe18g00326 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01046 Cpe-Chr3:8513101 Cpe04g01028 Cpe-Chr4:9123274 6.89E-72 dispersed
Cpe04g01028 Cpe-Chr4:9123274 Cpe05g01193 Cpe-Chr5:8256902 9.42E-58 dispersed
Cpe11g01195 Cpe-Chr11:9762295 Cpe04g01028 Cpe-Chr4:9123274 9.95E-98 wgd
Cpe18g00326 Cpe-Chr18:4738529 Cpe04g01028 Cpe-Chr4:9123274 0 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe04g01028 Cpe-Chr4:9123274 4.65E-71 wgd
Cpe04g01028 Cpe-Chr4:9123274 Cpe07g01065 Cpe-Chr7:9480069 1.72E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49397 PF08879 WRC 1.10E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01028 - - cmax:111467370 578.556