Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01033 ATGAAAATGATCACTCTTATTGATTTGCTTTGGGGTTTTTCTGATATTTTCAAGGCTCGCTTGACCACCGGTGCAAAGTTCGAATCAAAGAGCTTCTTGTTGCCAGAGTTTTGTGGTGGCATTGACTGTTATAAAATGGCGGATAAGGAAGAAGCAAAACAAGTTGTTCTACAGATTTTGGATTGTGAAGATGGAGGAGTTGGTGCGAGTAAAGATCTCAGTAAAATCTCTGTTGCAAAATTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGAAATCTGTGGTTGGGAGCTCTTCTTCACACGAGATTGCTAGAATGAATCCCTATAAACCTCCCAAAATTCCGGCCGAATCGGCAGTTCGGCGACCATCGTTTGCTCGTTCTTCGTTTTCAAAGCCAAAATCAAGGCTAGTTGAGCCACCTTGTCCTCATGGTGGGAGTTTGGCAGAAGAAACGTTTGCAGAAAAATCAATATCTGGTTCACCATTCTGTAGCTCTACGAAGATGGACTCCCCAGCTAGAATAACTGCTGTGACTAGTCCTAGAGAAGCTTTGAAATCGGTCCCAACAACTCCTAGAACACCATTTACTGGAAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGACAAAAACCATTTTAATCGAATGGTTTTCATTTTTGTGCTTGACGGGTTGTTTGATTTCTACCTTAACAGTAGACAAATTGGCGACGAAAGAGATCTGGGAATTAAGGTTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCAGTGGTCGATTATTTTCGCGGTGGTTTATCAATTGTCTAGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTCTACGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGACTTTGGTTCTTCTAGCATGGGGTCTATTATTTGATCGAACCAGCAAGAGATCTAAGAAAGGCCATGCGATTCTGAATTATGTTACTCGAGCTCTTGGTGGTTCTCTCATTGGAGCAGCAATATGGCTGGTGAAAACTTTGCTGGTGAAGATCCTAGCTGCTTCTTTTCAATGCACTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAGTATATACTGCGCACCCTATCAGGACCTCCACTGATGGAGATGGCTAAGGGAATTGGGAGAACAGCAGGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGTAAGGGACGGTGGGAAGGAAAGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAATCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCCATGTTATAAGAAGTTCAGGGCTATCCACCATATCTAATACAATAGAGAATTTTAGAGACGAAGAGCTTGAACAAAAAGATAAGGAGATTCACAGTGAATGGGAAGCAAGAGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTACATTGATGAAGACGATCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATATGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATCAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTATGTCGAACGCAAGTCGCTAGCCCACTCGTTGAACGACACGAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAACTGTAGCGATTGTTATTATCGTTGAATGGCTACTTATGATGGGTTTGTTGACGACACAAGTACTCGTCTTCTTTTCATCACAGCTTCTGCTGGTGGTCTTCATGTTCGGTAACACTGCCAGAACGGTATTTGAAGGCATCATATTCGTATTTGTGATGCATCCATTTGATGTCGGGGATCGTTGCGTCGTAGATGGTGTGCAGTTGATCGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATGTGACAATGAGAAGATCTTCTATCCGAACTCTGTTCTTGCCACAAAACCCATCAGTAACTTCTACAGAAGCCCGGAAATGGGCGATTCCATCGAATTTTCGGTCGACTTTTCCACATCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATAGAAAGCAAGCCTCAGTTCTGGCGCCCGAACCACAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGATTACATGTTAATCACACCATAAACTTTCAAAACTACGGCGACAAGAGCAGTCGCAGGTCGGAACTAGTGTTGGAGCTGAAGAAAGCTTTCGAGGATCTCGGCATCAAGTATCATCTCCTAGCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCACCTTCCCAGAGATGA 2439 41.9 MKMITLIDLLWGFSDIFKARLTTGAKFESKSFLLPEFCGGIDCYKMADKEEAKQVVLQILDCEDGGVGASKDLSKISVAKFPDFELKETRSFRCTIPKSVVGSSSSHEIARMNPYKPPKIPAESAVRRPSFARSSFSKPKSRLVEPPCPHGGSLAEETFAEKSISGSPFCSSTKMDSPARITAVTSPREALKSVPTTPRTPFTGNEEEDDEEVYRTAELKVKERSGKKLTKTILIEWFSFLCLTGCLISTLTVDKLATKEIWELRLWKWCVLVLVIFSGRLFSRWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLTLVLLAWGLLFDRTSKRSKKGHAILNYVTRALGGSLIGAAIWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAKGIGRTAGTGQLSFRHLKKVRDGGKERKEEVIDVDKLKKMNQEKISAWTMRGLIHVIRSSGLSTISNTIENFRDEELEQKDKEIHSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEVDNMLPLFEGAVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASATVAIVIIVEWLLMMGLLTTQVLVFFSSQLLLVVFMFGNTARTVFEGIIFVFVMHPFDVGDRCVVDGVQLIVEEMNILTTIFLRCDNEKIFYPNSVLATKPISNFYRSPEMGDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLHVNHTINFQNYGDKSSRRSELVLELKKAFEDLGIKYHLLAQEVQLNYVSSAAPMVPPSQR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9154023 9157247 - Cp4.1LG04g10920.1 Cpe04g01033 468595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01033 812 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 49 803 - -
Cpe04g01033 812 Gene3D - 641 690 IPR023408 -
Cpe04g01033 812 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 49 803 IPR016688 -
Cpe04g01033 812 SUPERFAMILY Sm-like ribonucleoproteins 631 690 IPR010920 -
Cpe04g01033 812 Pfam Mechanosensitive ion channel 582 787 IPR006685 GO:0016020|GO:0055085
Cpe04g01033 812 MobiDBLite consensus disorder prediction 186 208 - -
Cpe04g01033 812 PIRSF Memb_At2g17000 67 811 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01033 Cpe-Chr4:9154023 Cpe12g00061 Cpe-Chr12:359718 0 dispersed
Cpe18g00332 Cpe-Chr18:4787006 Cpe04g01033 Cpe-Chr4:9154023 0 wgd
Cpe02g00286 Cpe-Chr2:1478648 Cpe04g01033 Cpe-Chr4:9154023 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01033 K22048 - csv:101209209 1233.39