Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01040 ATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCAGACGTCTTTGATTCTGTTTCTGTAGCATCAAGTCATCGAATCATCACAAGAAGCTTTGATTTGAGTATCGATTCTACGGGGGTTGGAGCCTGGAAGTGGAAGATATCCACCATCAATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACACAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTGAGATGAAAATTGAGGAGTCTTACCGCAGGCAGATTGCTAAAGAACTCAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGGTCAATATATATCATTTTTGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCATTTGTAAGCAGGTGCTGAAGGGGCTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACCGACTTCGGTGTGAGTGCGATTATGGCAAGCACAACTGGAGAGGCTAATACTTTCGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTTGGAAATAGATATGGCAAAAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACCGGCAAATTCCCTTATTCTCCACCCGAGAAAGATGGAGGATGGGGTAACTTTTATGATCTTATGGTAGCCATTGCTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGAGCCGAAGGATAGACTGTCAGCACGTGAACTTTTGGAACACCCTTTCGTCAACATGTATGGAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGACTCCACTTGCAACGTTCTAA 1341 42.95 MRKGGLSNNLDLKLSLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEADVFDSVSVASSHRIITRSFDLSIDSTGVGAWKWKISTINEEGRLKQQSRPQTQSPSGRPIHSQVPSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDTIKVIGKGNGGTVQLVQHKWTAQFFALKVIEMKIEESYRRQIAKELKINQSAQCPYIVVCYQSFYDNGSIYIIFEYMDGGSLADFLKKVKKIEEPYLAAICKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTTGEANTFVGTYNYMSPERIVGNRYGKKSDIWSLGLILLECATGKFPYSPPEKDGGWGNFYDLMVAIAEGEPPSAPADQFTPNFCSFISACLQTEPKDRLSARELLEHPFVNMYGDTDIDLSSYFNDAGTPLATF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9193846 9200923 + Cp4.1LG04g10980.1 Cpe04g01040 468602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01040 446 CDD PKc_MAPKK_plant_like 160 425 - -
Cpe04g01040 446 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 56 - -
Cpe04g01040 446 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 120 445 - -
Cpe04g01040 446 SMART serkin_6 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 MobiDBLite consensus disorder prediction 97 118 - -
Cpe04g01040 446 PANTHER MAP KINASE KINASE 2 56 - -
Cpe04g01040 446 PANTHER MAP KINASE KINASE 120 445 - -
Cpe04g01040 446 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 Gene3D Phosphorylase Kinase; domain 1 138 241 - -
Cpe04g01040 446 Gene3D Transferase(Phosphotransferase) domain 1 242 441 - -
Cpe04g01040 446 SUPERFAMILY Protein kinase-like (PK-like) 147 426 IPR011009 -
Cpe04g01040 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cpe04g01040 446 Pfam Protein kinase domain 164 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 ProSitePatterns Protein kinases ATP-binding region signature. 168 191 IPR017441 GO:0005524
Cpe04g01040 446 MobiDBLite consensus disorder prediction 97 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01040 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101204545 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01040 Cpe18g00340 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01040 Cpe-Chr4:9193846 Cpe07g01073 Cpe-Chr7:9515287 1.11E-09 dispersed
Cpe18g00340 Cpe-Chr18:4849508 Cpe04g01040 Cpe-Chr4:9193846 3.29E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00340 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 5.8e-136 481.1
Cpe04g01040 CST 121 444 MAP Kinase Kinase Gene Family AT4G26070 67.6 3.1e-129 458.8
Cpe07g01073 . 67 391 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.9e-127 452.2
Cpe07g01036 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.7 2.5e-107 386.0
Cpe11g01143 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 9.6e-107 384.0
Cpe18g00340 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 7.0e-134 474.2
Cpe04g01040 CST 121 417 MAP Kinase Kinase Gene Family AT4G29810 69.7 1.5e-123 439.9
Cpe07g01073 . 41 365 MAP Kinase Kinase Gene Family AT4G29810 63.1 8.6e-116 414.1
Cpe07g01036 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 8.4e-111 397.5
Cpe11g01143 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 1.7e-108 389.8
Cpe03g00581 . 36 497 MAP Kinase Kinase Gene Family AT5G40440 76.4 3.2e-215 745.0
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 69.2 5.8e-126 448.0
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT1G51660 56.9 2.0e-102 369.8
Cpe20g00165 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.8e-82 303.5
Cpe09g01104 . 31 308 MAP Kinase Kinase Gene Family AT1G51660 54.3 1.2e-81 300.8
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.0 5.0e-127 451.4
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT3G21220 56.0 1.7e-103 373.2
Cpe20g00165 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.2e-83 307.4
Cpe09g01104 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-82 302.0
Cpe11g01143 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.4 6.4e-170 594.0
Cpe07g01036 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 7.1e-169 590.5
Cpe18g00340 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 3.0e-119 425.6
Cpe04g01040 CST 121 443 MAP Kinase Kinase Gene Family AT5G56580 57.7 1.3e-109 393.7
Cpe07g01073 . 41 380 MAP Kinase Kinase Gene Family AT5G56580 56.4 3.5e-107 385.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.0e-107 385.6
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.4 2.1e-105 379.4
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.7e-76 282.7
Cpe03g01040 . 37 249 MAP Kinase Kinase Gene Family AT1G18350 55.0 2.8e-65 246.1
Cpe20g00165 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.5e-79 292.7
Cpe09g01104 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.5 1.8e-77 286.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.7e-113 406.4
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 66.1 5.9e-111 397.9
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.5e-77 287.0
Cpe03g01040 . 39 249 MAP Kinase Kinase Gene Family AT1G73500 55.6 3.4e-66 249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62357 PF00069 Pkinase 4.20E-71 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01040 Cpe_Chr04 FPKM 7.384769 7.132192 6.831973 5.571186 17.233772 17.050486 19.609318 9.651941 9.099893 7.882582