Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01040 ATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCAGACGTCTTTGATTCTGTTTCTGTAGCATCAAGTCATCGAATCATCACAAGAAGCTTTGATTTGAGTATCGATTCTACGGGGGTTGGAGCCTGGAAGTGGAAGATATCCACCATCAATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACACAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTGAGATGAAAATTGAGGAGTCTTACCGCAGGCAGATTGCTAAAGAACTCAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGGTCAATATATATCATTTTTGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCATTTGTAAGCAGGTGCTGAAGGGGCTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACCGACTTCGGTGTGAGTGCGATTATGGCAAGCACAACTGGAGAGGCTAATACTTTCGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTTGGAAATAGATATGGCAAAAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACCGGCAAATTCCCTTATTCTCCACCCGAGAAAGATGGAGGATGGGGTAACTTTTATGATCTTATGGTAGCCATTGCTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGAGCCGAAGGATAGACTGTCAGCACGTGAACTTTTGGAACACCCTTTCGTCAACATGTATGGAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGACTCCACTTGCAACGTTCTAA 1341 42.95 MRKGGLSNNLDLKLSLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEADVFDSVSVASSHRIITRSFDLSIDSTGVGAWKWKISTINEEGRLKQQSRPQTQSPSGRPIHSQVPSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDTIKVIGKGNGGTVQLVQHKWTAQFFALKVIEMKIEESYRRQIAKELKINQSAQCPYIVVCYQSFYDNGSIYIIFEYMDGGSLADFLKKVKKIEEPYLAAICKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTTGEANTFVGTYNYMSPERIVGNRYGKKSDIWSLGLILLECATGKFPYSPPEKDGGWGNFYDLMVAIAEGEPPSAPADQFTPNFCSFISACLQTEPKDRLSARELLEHPFVNMYGDTDIDLSSYFNDAGTPLATF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9193846 9200923 + Cp4.1LG04g10980.1 Cpe04g01040 468602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01040 446 CDD PKc_MAPKK_plant_like 160 425 - -
Cpe04g01040 446 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 56 - -
Cpe04g01040 446 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 120 445 - -
Cpe04g01040 446 SMART serkin_6 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 MobiDBLite consensus disorder prediction 97 118 - -
Cpe04g01040 446 PANTHER MAP KINASE KINASE 2 56 - -
Cpe04g01040 446 PANTHER MAP KINASE KINASE 120 445 - -
Cpe04g01040 446 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 Gene3D Phosphorylase Kinase; domain 1 138 241 - -
Cpe04g01040 446 Gene3D Transferase(Phosphotransferase) domain 1 242 441 - -
Cpe04g01040 446 SUPERFAMILY Protein kinase-like (PK-like) 147 426 IPR011009 -
Cpe04g01040 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cpe04g01040 446 Pfam Protein kinase domain 164 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01040 446 ProSitePatterns Protein kinases ATP-binding region signature. 168 191 IPR017441 GO:0005524
Cpe04g01040 446 MobiDBLite consensus disorder prediction 97 125 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01040 Cpe18g00340 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01040 Cpe-Chr4:9193846 Cpe07g01073 Cpe-Chr7:9515287 1.11E-09 dispersed
Cpe18g00340 Cpe-Chr18:4849508 Cpe04g01040 Cpe-Chr4:9193846 3.29E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62357 PF00069 Pkinase 4.20E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01040 K20603 - csv:101204545 605.134