Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01040 | ATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCAGACGTCTTTGATTCTGTTTCTGTAGCATCAAGTCATCGAATCATCACAAGAAGCTTTGATTTGAGTATCGATTCTACGGGGGTTGGAGCCTGGAAGTGGAAGATATCCACCATCAATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAGGAAGACCAATCCATAGCCAAGTTCCTAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACACAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTGAGATGAAAATTGAGGAGTCTTACCGCAGGCAGATTGCTAAAGAACTCAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGGTCAATATATATCATTTTTGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCATTTGTAAGCAGGTGCTGAAGGGGCTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACCGACTTCGGTGTGAGTGCGATTATGGCAAGCACAACTGGAGAGGCTAATACTTTCGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTTGGAAATAGATATGGCAAAAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACCGGCAAATTCCCTTATTCTCCACCCGAGAAAGATGGAGGATGGGGTAACTTTTATGATCTTATGGTAGCCATTGCTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGAGCCGAAGGATAGACTGTCAGCACGTGAACTTTTGGAACACCCTTTCGTCAACATGTATGGAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGACTCCACTTGCAACGTTCTAA | 1341 | 42.95 | MRKGGLSNNLDLKLSLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEADVFDSVSVASSHRIITRSFDLSIDSTGVGAWKWKISTINEEGRLKQQSRPQTQSPSGRPIHSQVPSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDTIKVIGKGNGGTVQLVQHKWTAQFFALKVIEMKIEESYRRQIAKELKINQSAQCPYIVVCYQSFYDNGSIYIIFEYMDGGSLADFLKKVKKIEEPYLAAICKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTTGEANTFVGTYNYMSPERIVGNRYGKKSDIWSLGLILLECATGKFPYSPPEKDGGWGNFYDLMVAIAEGEPPSAPADQFTPNFCSFISACLQTEPKDRLSARELLEHPFVNMYGDTDIDLSSYFNDAGTPLATF | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9193846 | 9200923 | + | Cp4.1LG04g10980.1 | Cpe04g01040 | 468602 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01040 | 446 | CDD | PKc_MAPKK_plant_like | 160 | 425 | - | - | |
Cpe04g01040 | 446 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 2 | 56 | - | - | |
Cpe04g01040 | 446 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 120 | 445 | - | - | |
Cpe04g01040 | 446 | SMART | serkin_6 | 162 | 422 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01040 | 446 | MobiDBLite | consensus disorder prediction | 97 | 118 | - | - | |
Cpe04g01040 | 446 | PANTHER | MAP KINASE KINASE | 2 | 56 | - | - | |
Cpe04g01040 | 446 | PANTHER | MAP KINASE KINASE | 120 | 445 | - | - | |
Cpe04g01040 | 446 | ProSiteProfiles | Protein kinase domain profile. | 162 | 422 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01040 | 446 | Gene3D | Phosphorylase Kinase; domain 1 | 138 | 241 | - | - | |
Cpe04g01040 | 446 | Gene3D | Transferase(Phosphotransferase) domain 1 | 242 | 441 | - | - | |
Cpe04g01040 | 446 | SUPERFAMILY | Protein kinase-like (PK-like) | 147 | 426 | IPR011009 | - | |
Cpe04g01040 | 446 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 280 | 292 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe04g01040 | 446 | Pfam | Protein kinase domain | 164 | 422 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01040 | 446 | ProSitePatterns | Protein kinases ATP-binding region signature. | 168 | 191 | IPR017441 | GO:0005524 | |
Cpe04g01040 | 446 | MobiDBLite | consensus disorder prediction | 97 | 125 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01040 | Cpe18g00340 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01040 | Cpe-Chr4:9193846 | Cpe07g01073 | Cpe-Chr7:9515287 | 1.11E-09 | dispersed | |
Cpe18g00340 | Cpe-Chr18:4849508 | Cpe04g01040 | Cpe-Chr4:9193846 | 3.29E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62357 | PF00069 | Pkinase | 4.20E-71 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01040 | K20603 | - | csv:101204545 | 605.134 |