Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01042 GACGATTTGTTGCCCATCTTCAACCTCTTCTCTGAAATGGACGACAATTTCAGTGTGAATCACAGCCCCAAAAAGCGGCGCCGACAAGACAACGACGACGACGACGACCAGACTCAATTCAACAAGACTTCTTTCGACGACGACGAGTTATTAAAGCTCCCCTTCTGGTTCGACGATGACAAACAACAACACTGGATTATGGAACAAAAGCCTGAATTCCAGGTTTCCGATGAGAATTTGACTCAATTCGTACCTAAAAAGCCCCGCCGTGCAACGCCGGAAAATACCCATTCGTCTCCGGTGAAGGGTGGTGCTGGAACACAGCACCGGCGACTATGGGTCAAGGATAGATCCAAGGATTGGTGGGATCAATGCAATCACCCGGATTTCCCTGATGAGGAATTCCGGCGGGCTTTTAGAATGAGTAAAGCGACATTCGATATGATCTGTAAGGAATTGGACTCGACGGTGATGAAAAAAGACACAATGCTTCGTGTCGCGATTCCTGTCCGGCAGCGGGTTGCGGTATGTATATGGCGGTTGGCTACCGGCGAGCCGCTCCGGTTAGTGTCGAAACGGTTTGGGCTTGGAATCTCGACCTGTCATAAATTGGTTCTTGAGGTTTGTTCTGCAATTCGGAAAGTTCTAATGCCGAAATTCCTGCAATGGCCGGAGGATTCGAAATTAGCGAAAATCAAGCAAGAATTCGAGTCGATTTCAGGAATTCCCAAGGTCGGTGGCTCAATTTACACGACCCATATCCCAATAATCGCACCCAAGAACAACGTCGCCGCTTATTTCAACAAACGCCACACGGAACGCAACCAAAAAACATCATATTCCATCACCGTGCAAGGCGTTGTCGATCCCGCCGGCGTGTTCACCGACGTATGTATTGGGTGGCCGGGATCCATGCCGGACGATCAAGTTCTTGAAAAATCCGCCCTTTTCGAAAGGGCAAACATGGGTCTTTTAAAGGATGTCAGCATCGTCGGAAATTCAGGGTACCCATTAACGGATTGGCTTTTGGTGCCGTATTCAGCGCAGAATTTGACATGGACGCAACACGCTTTCAACGAGAAGGTATCGGAGATTCAGGGAGCGGCGAAGGCGGCGTTCGGGCGGCTGAAGGGGCGAACGGCATTGAATGAAGAACGCGAGCGGAAATGGGGGGATGCCACCTGCAAGACTGTGATGGTTAGAGCCATTCCATTGCAAAAACTGGGAAGGAACCAACGAATCCCCATTTCCCACTTGTCAGAAGCCTCTGGTTTTGGAGACCCATCAAGAGGAATCGAGAAAGAACAAGAAAAGGGTTATTATATGGAGAATCATCAGGAGGTTGAAAGCGAGGAAGAAGATGGAGTGGCGGAGGAGGAGGAGGAGGAGGAAGAAATTGGAGTCGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCGGCTAAACAGTATATTGAAAATCATTACAAGGCTCAAAAGAAACATATTCAAGAACGCAAAGAGAGGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCACAAGGAGACTCAATACATTCGGCTCAAAAGGAATAAGATTTGTGTTGAGGATTTTGACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTTAGACTTTGTCGGGAGAAGAAAACAGGTAACATATATGCTATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGCAAGATCTGATGTTGAACATGTCAGAGCTGAAAGGAATTTGCTTGCTGAAGTTGCAAGTCATTACATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTAATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAAGAAACTTTGACAGAAACCGTAGCCAGATTTTACATCGCTCAAAGCGTTCTAGCTATCGAGTCGATTCATACACATAACTACATTCACAGAGACATAAAACCGGACAACCTTCTTTTGGACCAAAGGGGTCATATGAAACTGTCTGATTTTGGTCTTTGCAAACCTCTCGACTGTTCAAATCTATCTTCTATAAATGAAAATGAAGTCCTTGACGACGATAACTTGCACGACACGGTGGATGTCGATGCGAGCGTTCCAGGGAAGAAAAGTGGGAGGCGTTGGAAGAGCCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGCATTCTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTTAAAAAAGGATATGGTGTTGAATGTGATTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCCGATGATCCAGTAACGACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGGTTATCACCTGAAGCAAAGGACCTGATTAGTAGGCTGCTTTGTGATGCAGACCATCGGCTTGGGACCGGAGACGCCGACCAAATAAAGACTCATCCTTGGTTCAAAGATATCGAGTGGGACAAACTCTATGATATAGATGCAGCATTTAAGCCTGAGGTCAATGGGGAACTTGATACGCAGAACTTTATGCAATTTGATGAGGTCGATCCACCGCCAACGAGAACGGGATCCGGACCAATAAGGAAGATGTTCTTGACTCCTAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGATGCTGTCAAAGGGCTACGCCATTCATTTGATTTGAACTCAACCACCAGCCCAATTCGGACTTCGTCAGTTGACTCAACACAAAGTGACTCGGCATTGAACTACTCAACGACGTACTCGAGCGGTGATAGGGAAGCCATATTGGGATCATCTGAGGATGCATTGTCACAGTAA 2925 45.71 DDLLPIFNLFSEMDDNFSVNHSPKKRRRQDNDDDDDQTQFNKTSFDDDELLKLPFWFDDDKQQHWIMEQKPEFQVSDENLTQFVPKKPRRATPENTHSSPVKGGAGTQHRRLWVKDRSKDWWDQCNHPDFPDEEFRRAFRMSKATFDMICKELDSTVMKKDTMLRVAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCSAIRKVLMPKFLQWPEDSKLAKIKQEFESISGIPKVGGSIYTTHIPIIAPKNNVAAYFNKRHTERNQKTSYSITVQGVVDPAGVFTDVCIGWPGSMPDDQVLEKSALFERANMGLLKDVSIVGNSGYPLTDWLLVPYSAQNLTWTQHAFNEKVSEIQGAAKAAFGRLKGRTALNEERERKWGDATCKTVMVRAIPLQKLGRNQRIPISHLSEASGFGDPSRGIEKEQEKGYYMENHQEVESEEEDGVAEEEEEEEEIGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERLASSDVSEEEQINLLKDLEHKETQYIRLKRNKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQARSDVEHVRAERNLLAEVASHYIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHTHNYIHRDIKPDNLLLDQRGHMKLSDFGLCKPLDCSNLSSINENEVLDDDNLHDTVDVDASVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDADHRLGTGDADQIKTHPWFKDIEWDKLYDIDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMFLTPKDLSFVGYTYKNFDAVKGLRHSFDLNSTTSPIRTSSVDSTQSDSALNYSTTYSSGDREAILGSSEDALSQ 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9213627 9222256 - Cp4.1LG04g10760.1 Cpe04g01042 468604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01042 974 Pfam DDE superfamily endonuclease 249 379 IPR027806 -
Cpe04g01042 974 CDD STKc_NDR_like 538 915 - -
Cpe04g01042 974 MobiDBLite consensus disorder prediction 18 43 - -
Cpe04g01042 974 MobiDBLite consensus disorder prediction 934 954 - -
Cpe04g01042 974 Pfam Protein kinase domain 542 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01042 974 Pfam Protein kinase domain 744 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01042 974 Gene3D Transferase(Phosphotransferase) domain 1 747 869 - -
Cpe04g01042 974 Gene3D Transferase(Phosphotransferase) domain 1 624 691 - -
Cpe04g01042 974 SMART pkinase_C_6 852 916 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe04g01042 974 Gene3D Phosphorylase Kinase; domain 1 538 623 - -
Cpe04g01042 974 MobiDBLite consensus disorder prediction 85 109 - -
Cpe04g01042 974 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 453 956 - -
Cpe04g01042 974 Coils Coil 442 462 - -
Cpe04g01042 974 SUPERFAMILY Protein kinase-like (PK-like) 522 900 IPR011009 -
Cpe04g01042 974 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Cpe04g01042 974 MobiDBLite consensus disorder prediction 447 463 - -
Cpe04g01042 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Cpe04g01042 974 ProSiteProfiles AGC-kinase C-terminal domain profile. 852 924 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe04g01042 974 Gene3D Phosphorylase Kinase; domain 1 870 880 - -
Cpe04g01042 974 PANTHER SERINE/THREONINE-PROTEIN KINASE 453 956 - -
Cpe04g01042 974 SMART serkin_6 540 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01042 974 ProSiteProfiles Protein kinase domain profile. 540 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01042 974 MobiDBLite consensus disorder prediction 444 463 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01042 Cpe18g00342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00275 Cpe-Chr2:1427219 Cpe04g01042 Cpe-Chr4:9213627 0 dispersed
Cpe04g01042 Cpe-Chr4:9213627 Cpe17g00198 Cpe-Chr17:1277546 0 dispersed
Cpe06g00250 Cpe-Chr6:1333974 Cpe04g01042 Cpe-Chr4:9213627 7.51E-112 dispersed
Cpe18g00342 Cpe-Chr18:4868147 Cpe04g01042 Cpe-Chr4:9213627 0 wgd
Cpe02g00274 Cpe-Chr2:1418832 Cpe04g01042 Cpe-Chr4:9213627 2.64E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62358 PF00069 Pkinase 3.10E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01042 K08790 - csv:101208238 916.376