Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01075 ATGGTGATCGGCCAACGCCACCGACCTGGTCCGTTGCTTCATATCACTCCATTGACGATACCAGAGGAACCTGCGAACGAGACGCGGCTTCCTTTTCCTTTGAGTGGAATCTCGGTGAGTTCTGATGACAATGCTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTAGCGGCATTTCAGCGATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTGATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTCGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAGAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTTCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGCCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGACGCGAATTCGCCTGACTCATATGATGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAACCGCTTCCGTTTCTGTCTTCTCCGGTGTCTGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCGGTATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCCAATTGGTTCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCAGCCTCCAACAGGTCCAGGGGTTGGGTTGCTAGACTTAACGGACCATGGATTCGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA 1152 52.6 MVIGQRHRPGPLLHITPLTIPEEPANETRLPFPLSGISVSSDDNANGGDYSPYHLQEVLAAFQRYLPSTSESEIESDLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPRDANSPDSYDESPLRQCLDGTCAKPLPFLSSPVSVSPSATPVDSPPVSPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVPIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDLTDHGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN 383
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 9425986 9427137 + Cp4.1LG04g10560.1 Cpe04g01075 468637
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01075 383 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 41 383 - -
Cpe04g01075 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Cpe04g01075 383 MobiDBLite consensus disorder prediction 238 258 - -
Cpe04g01075 383 PANTHER UNKEMPT FAMILY MEMBER 41 383 IPR045234 -
Cpe04g01075 383 Gene3D - 136 200 - -
Cpe04g01075 383 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Cpe04g01075 383 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Cpe04g01075 383 SMART c3hfinal6 136 162 IPR000571 GO:0046872
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00808 Cpe-Chr4:7624036 Cpe04g01075 Cpe-Chr4:9425986 7.00E-67 dispersed
Cpe04g01075 Cpe-Chr4:9425986 Cpe06g00230 Cpe-Chr6:1226770 1.04E-107 dispersed
Cpe07g01045 Cpe-Chr7:9388117 Cpe04g01075 Cpe-Chr4:9425986 7.52E-20 dispersed
Cpe18g00382 Cpe-Chr18:5117200 Cpe04g01075 Cpe-Chr4:9425986 0 wgd
Cpe02g00246 Cpe-Chr2:1280451 Cpe04g01075 Cpe-Chr4:9425986 2.09E-10 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49400 PF00642 zf-CCCH 4.40E-06 CL0537 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01075 - - csv:101204432 638.647