Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01075 | ATGGTGATCGGCCAACGCCACCGACCTGGTCCGTTGCTTCATATCACTCCATTGACGATACCAGAGGAACCTGCGAACGAGACGCGGCTTCCTTTTCCTTTGAGTGGAATCTCGGTGAGTTCTGATGACAATGCTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTAGCGGCATTTCAGCGATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTGATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTCGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAGAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTTCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGCCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGACGCGAATTCGCCTGACTCATATGATGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAACCGCTTCCGTTTCTGTCTTCTCCGGTGTCTGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCGGTATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCCAATTGGTTCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCAGCCTCCAACAGGTCCAGGGGTTGGGTTGCTAGACTTAACGGACCATGGATTCGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA | 1152 | 52.6 | MVIGQRHRPGPLLHITPLTIPEEPANETRLPFPLSGISVSSDDNANGGDYSPYHLQEVLAAFQRYLPSTSESEIESDLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPRDANSPDSYDESPLRQCLDGTCAKPLPFLSSPVSVSPSATPVDSPPVSPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVPIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDLTDHGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN | 383 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9425986 | 9427137 | + | Cp4.1LG04g10560.1 | Cpe04g01075 | 468637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01075 | 383 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 41 | 383 | - | - | |
| Cpe04g01075 | 383 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 161 | IPR000571 | GO:0046872 | |
| Cpe04g01075 | 383 | MobiDBLite | consensus disorder prediction | 238 | 258 | - | - | |
| Cpe04g01075 | 383 | PANTHER | UNKEMPT FAMILY MEMBER | 41 | 383 | IPR045234 | - | |
| Cpe04g01075 | 383 | Gene3D | - | 136 | 200 | - | - | |
| Cpe04g01075 | 383 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 163 | IPR000571 | GO:0046872 | |
| Cpe04g01075 | 383 | SMART | c3hfinal6 | 171 | 194 | IPR000571 | GO:0046872 | |
| Cpe04g01075 | 383 | SMART | c3hfinal6 | 136 | 162 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00808 | Cpe-Chr4:7624036 | Cpe04g01075 | Cpe-Chr4:9425986 | 7.00E-67 | dispersed | |
| Cpe04g01075 | Cpe-Chr4:9425986 | Cpe06g00230 | Cpe-Chr6:1226770 | 1.04E-107 | dispersed | |
| Cpe07g01045 | Cpe-Chr7:9388117 | Cpe04g01075 | Cpe-Chr4:9425986 | 7.52E-20 | dispersed | |
| Cpe18g00382 | Cpe-Chr18:5117200 | Cpe04g01075 | Cpe-Chr4:9425986 | 0 | wgd | |
| Cpe02g00246 | Cpe-Chr2:1280451 | Cpe04g01075 | Cpe-Chr4:9425986 | 2.09E-10 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49400 | PF00642 | zf-CCCH | 4.40E-06 | CL0537 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01075 | - | - | csv:101204432 | 638.647 |