Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01092 ATGGGGAGAGCCACCAGATGGCTGAAGAACTTGTTTGGGGTTAAGAAAGAAAAACAACCCACCATGGAAAATTCCACCTCCGCCTTCATGAAGGATAAGAACCCCACTTCTAATTTCGTCGGAGACGCCCAACTCTGCAACAATCCGGCTACAATACCGCCCAATTTATCCGCCGCTGAGGCCGCTTGGCTCAAATCCTTCTACTCCGAAACAGAGAAGGAACAGAGCAAGCACGCTATAGCAGTCGCTGCAGCCACTGCTGCTGCTGCTGATGCTGCGGTTGCTGCAGCACAAGCTGCCGTGGCTGTTGTCCGGCTCACTAGCCATGGGCGAGGTACTATGTTCGGTGGCGGCCGAGAGAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTTTCTGGCGAGAAAAGCACTGAGAGCGCTTAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTGATTCGTAAACAAGCAACGGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTTGAACTCCAAGCTCGAAAATCAACGGAGCGGTTTGACGACACAAGGAGTGAGCACACAGCTTCAGTACACAGCAGAAGGCTTTCATCTTCTTTTGACAACACACCATTTACAGCGCTTGAAGAAAGCCCCAAAATCGTTGAAATGGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTTGGCGACGACCCATTTCACCAAACGTTGTCGTCTCCACTCCCCTGTCGAACTCCATCGCGTTTGCAGATTCCTGATTGCCGGCATGATTCCGACTGGGGTCTCACTGGCGACGAGTGTCGTTTGATCTCGACAGCGCAGAGCACTCCACGATTCGTCAGCTCCGGCAGATCCAATGGCCCTCCGACGCCAGCGAAGAGCATGTGTGCAGATAATTTCTTCAGAGGGTACTTGAATTTCCCTAATTACATGGCGAATACTCAATCGTTTATGGCGAAATTGAGGTCCCAGAGTGCTCCGAAACAGAGGCCGGAGCCAGGCTCGAAGAAGAGGCTTTCGTTGAATGAATTAATGGAATCGAGAAGCAGTCTTAGTGGGGTTCGAATGCAGAGGTCTTGTTCGCAGGTACAAGAAGCCATTAATTTCAAGAATGCTGTGATGAGCAAACTGGATAGACCATCGGAATTCAACAACTTGCAGAGAAGATCATGA 1251 50.6 MGRATRWLKNLFGVKKEKQPTMENSTSAFMKDKNPTSNFVGDAQLCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGFLARKALRALKGLVKLQALVRGYLIRKQATATLHSMQALIRAQATVRSQRTRRFELQARKSTERFDDTRSEHTASVHSRRLSSSFDNTPFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRHDSDWGLTGDECRLISTAQSTPRFVSSGRSNGPPTPAKSMCADNFFRGYLNFPNYMANTQSFMAKLRSQSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9504874 9506664 - Cp4.1LG04g10240.1 Cpe04g01092 468654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01092 416 Pfam Protein of unknown function (DUF4005) 305 381 IPR025064 -
Cpe04g01092 416 MobiDBLite consensus disorder prediction 235 267 - -
Cpe04g01092 416 MobiDBLite consensus disorder prediction 193 214 - -
Cpe04g01092 416 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515
Cpe04g01092 416 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
Cpe04g01092 416 MobiDBLite consensus disorder prediction 193 209 - -
Cpe04g01092 416 MobiDBLite consensus disorder prediction 242 267 - -
Cpe04g01092 416 Gene3D - 117 171 - -
Cpe04g01092 416 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
Cpe04g01092 416 PANTHER - 1 407 - -
Cpe04g01092 416 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Cpe04g01092 416 SMART iq_5 119 141 IPR000048 GO:0005515
Cpe04g01092 416 SMART iq_5 142 163 IPR000048 GO:0005515
Cpe04g01092 416 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01092 - - - cmax:111495188 729.169
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01092 Cpe18g00396 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01460 Cpe-Chr3:11630733 Cpe04g01092 Cpe-Chr4:9504874 1.52E-38 dispersed
Cpe04g01092 Cpe-Chr4:9504874 Cpe08g00280 Cpe-Chr8:1807896 7.26E-38 dispersed
Cpe14g00120 Cpe-Chr14:648979 Cpe04g01092 Cpe-Chr4:9504874 6.98E-28 dispersed
Cpe12g00644 Cpe-Chr12:6309281 Cpe04g01092 Cpe-Chr4:9504874 1.06E-84 wgd
Cpe17g00525 Cpe-Chr17:4376627 Cpe04g01092 Cpe-Chr4:9504874 8.99E-06 wgd
Cpe18g00396 Cpe-Chr18:5187816 Cpe04g01092 Cpe-Chr4:9504874 2.02E-10 wgd
Cpe02g01697 Cpe-Chr2:13961624 Cpe04g01092 Cpe-Chr4:9504874 4.29E-71 wgd
Cpe03g01092 Cpe-Chr3:9011328 Cpe04g01092 Cpe-Chr4:9504874 2.72E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01092 Cpe_Chr04 FPKM 7.276385 7.926825 4.245461 4.303261 8.692108 9.850964 8.950926 1.529206 1.618092 1.828517