Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01119 ATGAGTGTTTCAAGGTTTGTGAAGTGTGTCACTGTCGGAGATGGAGCTGTTGGGAAGACTTGTATGCTCATCTGTTACACCAGTAACAAGTTCCCCACCGATTATATCCCCACAGTTTTCGACAACTTCAGTGCTAATGTGGCTGTGGATGGGAATATTGTCAACTTGGGATTATGGGACACTGCTGGTCAAGAAGATTACAGCAGACTTAGGCCACTGAGTTATAGGGGCGCTGATGTTTTTGTTCTGGCATTCTCGTTAATCAGTAAGGCGAGTTATGAGAATGTTCTTAAGAAGTGGATGCCGGAACTTAGACGGTTTGCGCCTAGTGTCCCTATTGTTCTTGTTGGAACAAAGTTGGATCTTCGTGACAATGGAGCTTATTTTGCTGATCAAATGAGATCAAACACAATAACATATTCTCAGGGAGAAGAGCTTAGGAAACAAATTGGTGCTGCTGCATATATTGAATGTAGCTCTAAGACTCAACAGAATGTCAAAGCTGTTTTTGACACTGCAATCAAGGTTGTTCTTCAACCTCCAAGGAGAATTGAGATGACTAGGAAGAAAAGAAGCCGAAGGTCTGGTTGCTCAATTGTAAGGTGCATTGCGTGTGGTGGATGTGCTGTTTAA 633 42.81 MSVSRFVKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADVFVLAFSLISKASYENVLKKWMPELRRFAPSVPIVLVGTKLDLRDNGAYFADQMRSNTITYSQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRIEMTRKKRSRRSGCSIVRCIACGGCAV 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9684438 9687161 + Cp4.1LG04g10190.1 Cpe04g01119 468681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01119 210 CDD Rop_like 6 178 - -
Cpe04g01119 210 TIGRFAM small_GTP: small GTP-binding protein domain 7 172 IPR005225 GO:0005525
Cpe04g01119 210 Gene3D - 1 183 IPR027417 -
Cpe04g01119 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Cpe04g01119 210 PRINTS Transforming protein P21 ras signature 7 28 - -
Cpe04g01119 210 PRINTS Transforming protein P21 ras signature 30 46 - -
Cpe04g01119 210 PRINTS Transforming protein P21 ras signature 47 69 - -
Cpe04g01119 210 PRINTS Transforming protein P21 ras signature 109 122 - -
Cpe04g01119 210 PRINTS Transforming protein P21 ras signature 155 177 - -
Cpe04g01119 210 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Cpe04g01119 210 ProSiteProfiles small GTPase Rab1 family profile. 2 205 - -
Cpe04g01119 210 PANTHER RHO FAMILY GTPASE 1 204 IPR003578 GO:0005525|GO:0007264
Cpe04g01119 210 ProSiteProfiles small GTPase Ras family profile. 2 204 IPR001806 GO:0003924|GO:0005525
Cpe04g01119 210 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Cpe04g01119 210 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC7 1 204 - -
Cpe04g01119 210 SMART ras_sub_4 4 180 - -
Cpe04g01119 210 SMART ran_sub_2 12 210 - -
Cpe04g01119 210 SMART rab_sub_5 7 180 - -
Cpe04g01119 210 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01119 Cpe11g01119 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01119 Cpe-Chr4:9684438 Cpe04g01544 Cpe-Chr4:12102510 1.38E-13 dispersed
Cpe11g01119 Cpe-Chr11:9305654 Cpe04g01119 Cpe-Chr4:9684438 5.73E-98 wgd
Cpe04g01119 Cpe-Chr4:9684438 Cpe07g01020 Cpe-Chr7:9232528 1.34E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01119 K04392 - csv:101208639 404.06