Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01123 ATGCTGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATGCCCCCTGCAACAGCATAGCCCAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTAAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCGAGCGAAGCTTCCAATAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGCGAAAGCCGCAGATGTCGAGTGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATGGTTCGGACACGACAAGGGCAAGGTCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAAAAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAACCACAGCAAGAATTCCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCCATGGAGTCGTAAAAGATGTCGCTCTCTCGGCACCGAGAATACCACCGATCGATGCTGCAGCTCATCATACTAGTAATAAAATGCTACCCCTACCTGAAAATGGGAAGGAATATTATGCCACGCAGTCCGCTCTCTATCCGAGCGGGAGGATTATTGATGACAAGGCCAACTTATCATCGTCTTCGAATATGGAACCATCTCGGCGTCCATGCAATACCACTCTCCCACATGACAATAAGGAGAATATAGTTCAATCTACAAATATTCTGGAAGATGAAGATTTAAAAAGATATGCCCTCGAGAAGGGATTCGAGATCTATGAGAAAATGCGTGCTGAAAATATCCCGATGAACGAAGCAACATTGACATCTGTGGCTCGAATGGCGATGTCTGTGGGTGATGGCGATCTGGCATTTGATATAGTGAAGCAGATGAAGCCATTAGGACTTAATCCAAGATTGCGCTCTTATGGCCCTGCGCTTTCTACTTTCTGCAATAAAGGGGAGATAGATAAAGCATTTTCAGTTGAGAAGCACATGTTGGAGCATGGTGTCTATCCAGAAGAGCCCGAGTTGGCAGCGCTTTTAAGAGTAAGTATAAACGCAAGTAACGCCGCAAAGGTGTACTATTTGTTGCATAAATTAAGAACAGGTGTAAGACAAGTCTCAACCTCTACTGCAGATCTTATTACTACCTGGTTTAAGAGCAAAGATGCAACAAGAGTGGGAAAAGTAAAACTGGATAAAGTGAAAATAAGGGAAGCTATAGAAAATGGCGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGAGGAAAATGGAATGTTTCATCTACAAATGTCGGAAAGGATGGCATGTGTAAAGCCTGTGGGGAAAAATTGGTAACAATTGATCTTGATCCTATTGAAACTGAGAATTTTGCTGAATCTGTTGCAGCCATAGCCACAAAAAGAGAGAAAAATTCAAGTTTTCAGAAATTTCAAAAATGGCTTGAACATTATGGACCATTTGAAGCAGTGATAGATGCTGCTAATGTTGGCCTGTTTATGGAAAGAAACTTCACACCATCTAGAGTCAATTTAATCGCCAATGGAATACGGCAGAAGCTTTCTTCAAAGAAGTGGCCTCTGATTGTATTGCATCACAGGCGAATCACTGGACGTAAGATGAATGAAGCACTCAATAGAACATTGATTGAGAAGTGGAAAAATGGCAATGCACTGTATGCAACGCCTACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCAATCAAATTCAAATGCTTGCTTGTGACGAACGATGAGATGCGAGACCATACGTGCGTTTTAGTTTCTCTGCTACTGGTCCAGTGTTTCACATGCCTCCACCCTGTTCTGTCGAATCAGAAAAAGGCCATTGGCATGTTCCCATTGCATCAGAGCATAGTTACGAAGAAGATAGAGAATGGCTATAACCGCAGAATCAAAAGAATGAGCCGGAACCGAAGAAGCAAAGCCAAAACCAAATGCCTACCTAAGGACTCTTCTTCTCAGCAATGGAAATTTGGAAACTCGAGCCGAAGTCAAAATCTAGAAACAACCCTCGAGCCAAGTCCACATGAAGAATTTTTCACAGAAAATTACAAAAGTCCAACAAGTATTTTCTGCAGCTGTTTTCATGAACAAATGCAACTTACTAATAGAAATAGAGGCCGCAGAAAAGCTTGGTGGCTGCACCATTGA 2751 42.82 MLGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGPELCFGPTGKDAPCNSIAQFHQANNMLSSGASTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASNNIAEQRIAEKQINDPLQISRASTGDRSQDQEADAKAADVECGSLNQGDRIVHHNSNSDGSDTTRARSMSPGTLALMCDEKDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNSTSNSGYRQRIISHGVVKDVALSAPRIPPIDAAAHHTSNKMLPLPENGKEYYATQSALYPSGRIIDDKANLSSSSNMEPSRRPCNTTLPHDNKENIVQSTNILEDEDLKRYALEKGFEIYEKMRAENIPMNEATLTSVARMAMSVGDGDLAFDIVKQMKPLGLNPRLRSYGPALSTFCNKGEIDKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAAKVYYLLHKLRTGVRQVSTSTADLITTWFKSKDATRVGKVKLDKVKIREAIENGGGGWHGLGWLGRGKWNVSSTNVGKDGMCKACGEKLVTIDLDPIETENFAESVAAIATKREKNSSFQKFQKWLEHYGPFEAVIDAANVGLFMERNFTPSRVNLIANGIRQKLSSKKWPLIVLHHRRITGRKMNEALNRTLIEKWKNGNALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTCVLVSLLLVQCFTCLHPVLSNQKKAIGMFPLHQSIVTKKIENGYNRRIKRMSRNRRSKAKTKCLPKDSSSQQWKFGNSSRSQNLETTLEPSPHEEFFTENYKSPTSIFCSCFHEQMQLTNRNRGRRKAWWLHH 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9714482 9722797 + Cp4.1LG04g10210.1 Cpe04g01123 468685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01123 916 MobiDBLite consensus disorder prediction 832 875 - -
Cpe04g01123 916 ProSiteProfiles CRC domain profile. 1 44 IPR005172 -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 847 872 - -
Cpe04g01123 916 Gene3D Tetratricopeptide repeat domain 425 824 IPR011990 GO:0005515
Cpe04g01123 916 PANTHER OS02G0273800 PROTEIN 417 812 - -
Cpe04g01123 916 Pfam Protein-only RNase P 623 788 IPR031595 -
Cpe04g01123 916 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 7 41 IPR005172 -
Cpe04g01123 916 Pfam Pentacotripeptide-repeat region of PRORP 433 581 IPR033443 -
Cpe04g01123 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 220 242 - -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 223 242 - -
Cpe04g01123 916 Gene3D - 640 812 - -
Cpe04g01123 916 SMART CXC_2 4 45 IPR033467 -
Cpe04g01123 916 PANTHER UNCHARACTERIZED 417 812 - -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 399 420 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01123 Cpe18g00422 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01123 Cpe-Chr4:9714482 Cpe18g00421 Cpe-Chr18:5355816 0 dispersed
Cpe18g00422 Cpe-Chr18:5362708 Cpe04g01123 Cpe-Chr4:9714482 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49403 PF16953 PRORP 4.20E-49 CL0280 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01123 K18213 - csv:101210714 630.172