Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01123 ATGCTGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATGCCCCCTGCAACAGCATAGCCCAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTAAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCGAGCGAAGCTTCCAATAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGCGAAAGCCGCAGATGTCGAGTGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATGGTTCGGACACGACAAGGGCAAGGTCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAAAAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAACCACAGCAAGAATTCCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCCATGGAGTCGTAAAAGATGTCGCTCTCTCGGCACCGAGAATACCACCGATCGATGCTGCAGCTCATCATACTAGTAATAAAATGCTACCCCTACCTGAAAATGGGAAGGAATATTATGCCACGCAGTCCGCTCTCTATCCGAGCGGGAGGATTATTGATGACAAGGCCAACTTATCATCGTCTTCGAATATGGAACCATCTCGGCGTCCATGCAATACCACTCTCCCACATGACAATAAGGAGAATATAGTTCAATCTACAAATATTCTGGAAGATGAAGATTTAAAAAGATATGCCCTCGAGAAGGGATTCGAGATCTATGAGAAAATGCGTGCTGAAAATATCCCGATGAACGAAGCAACATTGACATCTGTGGCTCGAATGGCGATGTCTGTGGGTGATGGCGATCTGGCATTTGATATAGTGAAGCAGATGAAGCCATTAGGACTTAATCCAAGATTGCGCTCTTATGGCCCTGCGCTTTCTACTTTCTGCAATAAAGGGGAGATAGATAAAGCATTTTCAGTTGAGAAGCACATGTTGGAGCATGGTGTCTATCCAGAAGAGCCCGAGTTGGCAGCGCTTTTAAGAGTAAGTATAAACGCAAGTAACGCCGCAAAGGTGTACTATTTGTTGCATAAATTAAGAACAGGTGTAAGACAAGTCTCAACCTCTACTGCAGATCTTATTACTACCTGGTTTAAGAGCAAAGATGCAACAAGAGTGGGAAAAGTAAAACTGGATAAAGTGAAAATAAGGGAAGCTATAGAAAATGGCGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGAGGAAAATGGAATGTTTCATCTACAAATGTCGGAAAGGATGGCATGTGTAAAGCCTGTGGGGAAAAATTGGTAACAATTGATCTTGATCCTATTGAAACTGAGAATTTTGCTGAATCTGTTGCAGCCATAGCCACAAAAAGAGAGAAAAATTCAAGTTTTCAGAAATTTCAAAAATGGCTTGAACATTATGGACCATTTGAAGCAGTGATAGATGCTGCTAATGTTGGCCTGTTTATGGAAAGAAACTTCACACCATCTAGAGTCAATTTAATCGCCAATGGAATACGGCAGAAGCTTTCTTCAAAGAAGTGGCCTCTGATTGTATTGCATCACAGGCGAATCACTGGACGTAAGATGAATGAAGCACTCAATAGAACATTGATTGAGAAGTGGAAAAATGGCAATGCACTGTATGCAACGCCTACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCAATCAAATTCAAATGCTTGCTTGTGACGAACGATGAGATGCGAGACCATACGTGCGTTTTAGTTTCTCTGCTACTGGTCCAGTGTTTCACATGCCTCCACCCTGTTCTGTCGAATCAGAAAAAGGCCATTGGCATGTTCCCATTGCATCAGAGCATAGTTACGAAGAAGATAGAGAATGGCTATAACCGCAGAATCAAAAGAATGAGCCGGAACCGAAGAAGCAAAGCCAAAACCAAATGCCTACCTAAGGACTCTTCTTCTCAGCAATGGAAATTTGGAAACTCGAGCCGAAGTCAAAATCTAGAAACAACCCTCGAGCCAAGTCCACATGAAGAATTTTTCACAGAAAATTACAAAAGTCCAACAAGTATTTTCTGCAGCTGTTTTCATGAACAAATGCAACTTACTAATAGAAATAGAGGCCGCAGAAAAGCTTGGTGGCTGCACCATTGA 2751 42.82 MLGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGPELCFGPTGKDAPCNSIAQFHQANNMLSSGASTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASNNIAEQRIAEKQINDPLQISRASTGDRSQDQEADAKAADVECGSLNQGDRIVHHNSNSDGSDTTRARSMSPGTLALMCDEKDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNSTSNSGYRQRIISHGVVKDVALSAPRIPPIDAAAHHTSNKMLPLPENGKEYYATQSALYPSGRIIDDKANLSSSSNMEPSRRPCNTTLPHDNKENIVQSTNILEDEDLKRYALEKGFEIYEKMRAENIPMNEATLTSVARMAMSVGDGDLAFDIVKQMKPLGLNPRLRSYGPALSTFCNKGEIDKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAAKVYYLLHKLRTGVRQVSTSTADLITTWFKSKDATRVGKVKLDKVKIREAIENGGGGWHGLGWLGRGKWNVSSTNVGKDGMCKACGEKLVTIDLDPIETENFAESVAAIATKREKNSSFQKFQKWLEHYGPFEAVIDAANVGLFMERNFTPSRVNLIANGIRQKLSSKKWPLIVLHHRRITGRKMNEALNRTLIEKWKNGNALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTCVLVSLLLVQCFTCLHPVLSNQKKAIGMFPLHQSIVTKKIENGYNRRIKRMSRNRRSKAKTKCLPKDSSSQQWKFGNSSRSQNLETTLEPSPHEEFFTENYKSPTSIFCSCFHEQMQLTNRNRGRRKAWWLHH 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9714482 9722797 + Cp4.1LG04g10210.1 Cpe04g01123 468685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01123 916 MobiDBLite consensus disorder prediction 832 875 - -
Cpe04g01123 916 ProSiteProfiles CRC domain profile. 1 44 IPR005172 -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 847 872 - -
Cpe04g01123 916 Gene3D Tetratricopeptide repeat domain 425 824 IPR011990 GO:0005515
Cpe04g01123 916 PANTHER OS02G0273800 PROTEIN 417 812 - -
Cpe04g01123 916 Pfam Protein-only RNase P 623 788 IPR031595 -
Cpe04g01123 916 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 7 41 IPR005172 -
Cpe04g01123 916 Pfam Pentacotripeptide-repeat region of PRORP 433 581 IPR033443 -
Cpe04g01123 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 220 242 - -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 223 242 - -
Cpe04g01123 916 Gene3D - 640 812 - -
Cpe04g01123 916 SMART CXC_2 4 45 IPR033467 -
Cpe04g01123 916 PANTHER UNCHARACTERIZED 417 812 - -
Cpe04g01123 916 MobiDBLite consensus disorder prediction 399 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01123 K18213 PRORP; proteinaceous RNase P [EC:3.1.26.5] - csv:101210714 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01123 Cpe18g00422 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01123 Cpe-Chr4:9714482 Cpe18g00421 Cpe-Chr18:5355816 0 dispersed
Cpe18g00422 Cpe-Chr18:5362708 Cpe04g01123 Cpe-Chr4:9714482 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g320 . . . . . . . Bma11g00521 Cmo10g00668 Cmo11g00626 . . . . Sed08g0786 Cpe04g01123 Cpe18g00422 Bhi02g01149 Tan09g1265 Cmetu02g0123 . Hepe09g0772 . . . . . . . . . . . . . Lsi06g00858 . . Cme02g01386 . Blo14g00499 Bda02g00439 . . . . . . . . Cma10g00633 Cma11g00618 . Car11g00498 . . . . . . . . . . . . . . . . . Csa01g01711 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g01018 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.9 9.9e-138 487.6
Cpe11g01118 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.2 1.9e-136 483.4
Cpe11g01118 CCT,CST,ECH 93 526 CPP Transcription Factor Family AT4G29000 61.8 8.4e-146 514.6
Cpe07g01018 CCT,CST,ECH 99 526 CPP Transcription Factor Family AT4G29000 62.2 9.2e-145 511.1
Cpe18g00421 CCT,ECH 25 538 CPP Transcription Factor Family AT4G29000 52.7 4.0e-140 495.7
Cpe04g01123 CST 1 315 CPP Transcription Factor Family AT4G29000 54.0 2.6e-83 307.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002746 2 4 1 1 1 1 2 1 1 2 1 1 3 2 2 3 1 4 2 1 2 2 2 2 1 2 1 2 4 2 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49403 PF16953 PRORP 4.20E-49 CL0280 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01123 Cpe_Chr04 FPKM 9.090186 7.100417 25.039875 24.825743 5.034849 6.496891 4.732677 28.769106 33.487011 31.015188