Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01139 | ATGGAAAATCAATCCAATGGAAAATCCGAGTCCCATCTCAACATACCCAAAATCAAGTTCACCAAGCTCTTCATCAATGGACAATTTGTTGACTCTGTTTCAGGAAAAACTTTCGAGACGTTCGATCCAAGAACTGGTAAGGTTATCACGACGGTTGCCGCCGGTGAGAAAGAAGATGTGGATCTGGCCGTGAAAGCAGCCCGTGAAGCCTTCGATCACGGCCCTTGGCCCCGCATGTCTGGTGCCGACAGGGGACGAATAATGATGAAACTAGGGGACTTAATAGATGAACACGTGGAGGAACTCGCAGCATTGGATTCCCTGGACGGCGGAAAATTGTTTCAGATGGGGAAGATCGTCGACGTACCCTCGGCTGCTAATATGCTACGGTACTACGCCGGTGCCGCGGATAAAATCCACGGGGAGGTACTCAAAATGGCAAGGCCGTTTCACGGCTACACTTTAATGGAGCCCATGGGAGTGGTGGCCCACATCATACCCTGGAACTTTCCGACCACCATGTTCTTCTTGAAAGTGAGCCCCGCCTTGGCTGCCGGCTGCACCATGCTCGTCAAACCTGCCGAGCAAACGCCGCTCTCCGCCCTCTTCTACGCCCATCTCGCTAAATTGGCTGGTATTCCTGATGGAGTACTGAACGTTGTGACAGGATACGGATACACTGCAGGGTCAGCAATTGCGTACCACATGGACATTGACAAGGTGAGTTTCACAGGATCAACAAAGGTGGGAAGATCGATAATGCAGGCGGCAAGTGAGAGCAACCTGAAGCAAGTATCGTTGGAATTAGGAGGCAAATCGCCGCTCCTAATCTTCGATGATGCGGATGTGAATAAAGCCGTTGATATTGCTGTTCTTGGCATTTTCTATAACAAGGGAGAAACTTGCGCGGCGAGCTCCCGAGTTTTGGTTCAAGAAGGGATTTATGATGAATTTGTGAAAAAGATTATTGAAAAGGCGAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTCAGTATGGACCCCAGGTGGATGAAAAGCAATTGAAGAAAATTCTGGAATATATCGAGCACGGTAAGAGGGAAGGAGCCACATTGGCGACAGGCGGCAGGCGTATAGGCGAGGTGGGGTATTACGTAGAGCCAACAATCTTCACAGACGTCAAGGAACACTCGCTGATCGCACAGGACGAAATCTTCGGGCCATTCCTCTGCGTCATTAAATTCAAAACGATCGAAGAGGGAATAAAGATCGCGAACAACACAAAGTTCGGGCTAGCTGCTGGAATAGTGACGAACAGTGTAGACATAATGAACACGGTTTCGAGGTCGATCAGAGCCGGAACCATCTGGGTGAACTGTTACTTTGCTTTCGATTCGAGCTGTCCATTTGGAGGGTACAAGATGAGTGGGTTCGGTAGGGACGCTGGAATGCACGCTGTTCATAAGTATCTTCAAACCAAAGCCATCGTCACTCCTTTGAAAGTTTTAATTATGGTGACTTGTCCTCGAATTCAACCCATGGCCTGCAAATCTCTTGCTTCTCACCGATTTCGTAACTCTTTGCCTATCTCTTCCATTTCCAACGCATCCATGTTTTCCCGGGCGACGTATCCAACGGCATCAACAGTACACCGCTCGAAGACCTTCGCCTGTCGTTCTGTATCGGTTGCCAGCAGCAATTTTACTTGGGAAGACGCTGTCCACATTTCTCTGCCAGAAAGCTTTCAGGACGATCCCTCAGATCTTACCGGCTATTTCGAGAAGGTCAAGCTCTGCAATCGCGGATCAGATATGCAATCCGAATTTCTTCCATTTGTAATCGATGACCAAATTGTTGGTCATGTGCACCACGGCTTTGCTTATCACCTGAAGAAGTATGCGAATGTGTTTACCTTCCCCCGGGATGATTCTGTTCGAGTTGGCGCTTGCTTAAGCTTGCATGAATCGTTGAAGACACCAGAAGATAGGACGCATGCAGTTGGAAATGTAGTCAAATGCTTGGGTGAAGAAATTATTCCAGGTATACGGAACGAGATGTACCCTGTAACTTCGTCCTTTGGTGCGCCGGTTTTTTTCTCACTTGAACGTGCAGCAGCTCCTTATTTTGGAATAAAGGTTTATGGAGTTCAGATGAATGGTTATGTTGAGAAGGATGGAAAGAAATTTTTGTGGATAGCAAAAAGAAGTCAAATGAAGCAAACTTTTCCTGGAATGCTGGATGAATTAGTAGCTGGAGGGCTGCCTGAGGGCGTTTCTTGCGGGGAGAATCTGATGAAGGAATGTGAAGAGGAAGCAGGCATACCAAGATCAATATCAAATAAAGCCATACCTGTTGGTGCTGTTTCCTATTCAGACATCAAAGATTATAGTTACAAGAGAGATGTTCTATTTTGTTACGATTTAAAGCTTCCTGAAAGTTTTATACCGAAGAATCAAGATGGGGAGGTTGAAGGATTCAGGTTGTTGCCTGTGACAAACGTTGCAAATGTGATTCGGAGGACACAGTTATTCAAGCATAATTGTGCTCTCGTCATCATTGACTTCCTATTTCGACATGGGTACATTAAACCCGAAAGTTTGGGGTACTTGGAGCTACTACAAAGCTTGAAGAGTGGAACCTGCTTCTAA | 2634 | 46.74 | MENQSNGKSESHLNIPKIKFTKLFINGQFVDSVSGKTFETFDPRTGKVITTVAAGEKEDVDLAVKAAREAFDHGPWPRMSGADRGRIMMKLGDLIDEHVEELAALDSLDGGKLFQMGKIVDVPSAANMLRYYAGAADKIHGEVLKMARPFHGYTLMEPMGVVAHIIPWNFPTTMFFLKVSPALAAGCTMLVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGYTAGSAIAYHMDIDKVSFTGSTKVGRSIMQAASESNLKQVSLELGGKSPLLIFDDADVNKAVDIAVLGIFYNKGETCAASSRVLVQEGIYDEFVKKIIEKAKSWVVGDPFDPKVQYGPQVDEKQLKKILEYIEHGKREGATLATGGRRIGEVGYYVEPTIFTDVKEHSLIAQDEIFGPFLCVIKFKTIEEGIKIANNTKFGLAAGIVTNSVDIMNTVSRSIRAGTIWVNCYFAFDSSCPFGGYKMSGFGRDAGMHAVHKYLQTKAIVTPLKVLIMVTCPRIQPMACKSLASHRFRNSLPISSISNASMFSRATYPTASTVHRSKTFACRSVSVASSNFTWEDAVHISLPESFQDDPSDLTGYFEKVKLCNRGSDMQSEFLPFVIDDQIVGHVHHGFAYHLKKYANVFTFPRDDSVRVGACLSLHESLKTPEDRTHAVGNVVKCLGEEIIPGIRNEMYPVTSSFGAPVFFSLERAAAPYFGIKVYGVQMNGYVEKDGKKFLWIAKRSQMKQTFPGMLDELVAGGLPEGVSCGENLMKECEEEAGIPRSISNKAIPVGAVSYSDIKDYSYKRDVLFCYDLKLPESFIPKNQDGEVEGFRLLPVTNVANVIRRTQLFKHNCALVIIDFLFRHGYIKPESLGYLELLQSLKSGTCF | 877 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9800137 | 9808003 | + | Cp4.1LG04g09880.1 | Cpe04g01139 | 468701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01139 | 877 | Gene3D | Nucleoside Triphosphate Pyrophosphohydrolase | 693 | 873 | - | - | |
| Cpe04g01139 | 877 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 271 | 460 | IPR016163 | GO:0016620 | |
| Cpe04g01139 | 877 | ProSiteProfiles | Nudix hydrolase domain profile. | 708 | 849 | IPR000086 | - | |
| Cpe04g01139 | 877 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 295 | 306 | IPR016160 | GO:0016491 | |
| Cpe04g01139 | 877 | SUPERFAMILY | Nudix | 681 | 856 | IPR015797 | - | |
| Cpe04g01139 | 877 | SUPERFAMILY | ALDH-like | 15 | 493 | IPR016161 | GO:0016491 | |
| Cpe04g01139 | 877 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 267 | 274 | IPR029510 | GO:0016491 | |
| Cpe04g01139 | 877 | Pfam | Aldehyde dehydrogenase family | 29 | 491 | IPR015590 | GO:0016491 | |
| Cpe04g01139 | 877 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 4 | 495 | - | - | |
| Cpe04g01139 | 877 | PANTHER | DEHYDROGENASE, PUTATIVE-RELATED | 4 | 495 | - | - | |
| Cpe04g01139 | 877 | CDD | Nudix_hydrolase_3 | 676 | 855 | - | - | |
| Cpe04g01139 | 877 | Pfam | Domain of unknown function (DUF4743) | 587 | 707 | IPR031804 | - | |
| Cpe04g01139 | 877 | Pfam | NUDIX domain | 720 | 829 | IPR000086 | - | |
| Cpe04g01139 | 877 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 25 | 489 | IPR016162 | GO:0016491 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00361 | Cpe-Chr4:4234773 | Cpe04g01139 | Cpe-Chr4:9800137 | 1.98E-10 | dispersed | |
| Cpe04g01139 | Cpe-Chr4:9800137 | Cpe07g00001 | Cpe-Chr7:393 | 0 | dispersed | |
| Cpe10g00532 | Cpe-Chr10:3113643 | Cpe04g01139 | Cpe-Chr4:9800137 | 8.90E-46 | dispersed | |
| Cpe12g00579 | Cpe-Chr12:5865017 | Cpe04g01139 | Cpe-Chr4:9800137 | 8.71E-32 | dispersed | |
| Cpe18g00451 | Cpe-Chr18:5499521 | Cpe04g01139 | Cpe-Chr4:9800137 | 0 | transposed | |
| Cpe18g00444 | Cpe-Chr18:5463577 | Cpe04g01139 | Cpe-Chr4:9800137 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01139 | K12355 | - | csv:101219029 | 837.025 |