Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01174 ATGGAGGGCCTCAGAAACAGAGGAGTTTTCAGGGTTTCTGTTTGTGGGCAACAGGAGCTCGAGCAACTCTCTAGAGATGGCAGTCAGTATAGCCTCACCACCGGAGTATTGCCGTCTCTTGGAGCTAGAAGTAACCGGAGAGTTAAGCTTCGGTGGTTTATCATATCGCCCTATGACCGTCGATACAGGATCTGGGAGACATTTCTAGTTGTTTTAGTGGTTTATACAGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCAGTTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTGTTCTAACATTCTTTGTGGCTTATCTTCATAAAGCCACCTATTTACTTGTGGATGAACCAAAGAAGATAGCTCTAAAGTATGCACGTTCATGGCTAATCCTTGATGTCATATCAACAATCCCTTCCGAACTTGCTCAGAAAATTTCCCCACCACCGCTCCGTTCCTATGGATTATTCAACATGCTTCGTTTATGGCGTCTAAGAAGAGTCAGTGCTCTGTTTTCCAGATTGGAAAAAGATAAGAACTACAACTACTTCTGGGTTCGATGTGCGAAGCTTATTTGTGTTACTCTCTTTGCGGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCTCGTAATAGTGACCCGACTAAAACATGGATTGGAGCGTCTATTGATGACTTTCTCAATCAAAGTTTGTGGGTTAGATATGTCACTTCCATTTACTGGTCCATCACTACCTTAACCACTGTTGGGTATGGCGATTTGCATCCTGTGAATTCAAAGGAGATGATTTTTGACATTTTCTACATGCTTTTCAATCTTGGCTTGACAGCATATTTGATTGGAAATATGACCAACTTAGTTGTTCATGGCACCGGTAGAACTAGAAAATTTAGAGATACCATTCAAGCGGCTTCGAGTTTCGCTCATAGGAATCAACTTCCTCCCCGTTTGCAAGACCAAATGCTTGCACATTTGTGTTTAAAGTTCAGGACTGACTCTGAAGGATTGCAGCAGCAAGAAACTCTTGACTCCTTGCCTAAAGCCATTCGATCAAGCATTTCTCATTATCTGTTCTATTCTCTAGTAGACAAAGTCTACTTGTTTCGTGGTGTTTCGAATGATCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTACTTTCCTCCAAAGGAAGATGTGATTTTACAAAATGAAGCGCCGACCGACTTTTACATTCTTGTCACGGGTGCTGTGCTTGTTGGAGAGGCTAGAACCGGGGATCTTTGTGGTGAGATTGGGGTGTTATGTTACAGGCCACAACTATTTACGGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGCTTTCCTTAATATCGTTCAATCTAATGTCGGCGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAGGGACCTCAAAGACAAGGACCCCATCATGGAAGGGGTATTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGCTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAGCTTTTGAAACGAGGTCTCGATCCAAATGAATCGGACAACAACGGGCGTACTTCACTCCACATAGCAGCATCAAATGGAAACGAGAACTGTGTGCTTCTGTTACTGGACTATGGAGCAGATCCCAATAGCAGAGATTCTGATGGAAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCATGAGCCAGTTATTCAGCTACTTATGGACAATGGAGCTAATCTTCGATCGGGGGACGTGGGTCAATTTGTGTGCACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTGTCCGATATGGAGGAGACGTTAGGAGTGCCAAGATCAATGGAACGACAGCTTTGCATGTTGCTGTTTGTGAAGACAACATTGAGATTGTTAAGTTCCTTCTTCAACAAGGAGCTGATATTGACAAAGCTGATGTTCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGGCATGAAGAGATTAAAAATCTCTTCCAGACAACCAAAGAGTCAAAAACTCAATCTGTCATTGCCATTCCCGAGAAGCAGACTGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTACGATTCGCCCCGTACCTCAGGAAGGAAATGATGGTTCGTTGTCGGGTCATTCACGTCCACGGCGTAGAACTAACAACTTCAATAACTCATTGTTTGGAATCATGTCAGCAGCTCACTCTGGTGGGAAAGACATTCTTTTTCCTGATAACCAAACCGGAGGAGAGCACTCAGGAACCAACCCTGCTAGGGTGATAATCAGCTGTCCAGAGGTTGGCGAAGTTGGTGGGAAGTTGGTGCTGCTCCCGGGTAGCTACAACGAGCTGCTCGAGATCGGTTCCAAGAAATATGGGATTGTGGGTGCAAAGGTATTGACCAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGAGACGGTGATCATCTTGTTTTTGTCAGCGATGGAAAAACCATATAG 2589 44.42 MEGLRNRGVFRVSVCGQQELEQLSRDGSQYSLTTGVLPSLGARSNRRVKLRWFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLHKATYLLVDEPKKIALKYARSWLILDVISTIPSELAQKISPPPLRSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARNSDPTKTWIGASIDDFLNQSLWVRYVTSIYWSITTLTTVGYGDLHPVNSKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTGRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVLVGEARTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLRDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEPVIQLLMDNGANLRSGDVGQFVCTAAEQNNLQLLKEIVRYGGDVRSAKINGTTALHVAVCEDNIEIVKFLLQQGADIDKADVHGWTPRDLADQQGHEEIKNLFQTTKESKTQSVIAIPEKQTGIRFLGRFTSEPTIRPVPQEGNDGSLSGHSRPRRRTNNFNNSLFGIMSAAHSGGKDILFPDNQTGGEHSGTNPARVIISCPEVGEVGGKLVLLPGSYNELLEIGSKKYGIVGAKVLTKDGAAIEDIEVIRDGDHLVFVSDGKTI 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10007142 10011928 + Cp4.1LG04g09500.1 Cpe04g01174 468736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01174 862 Pfam Cyclic nucleotide-binding domain 400 474 IPR000595 -
Cpe04g01174 862 CDD CAP_ED 380 474 IPR000595 -
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat region circular profile. 549 580 - -
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat region circular profile. 646 677 - -
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat region circular profile. 582 613 - -
Cpe04g01174 862 Gene3D - 63 301 - -
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe04g01174 862 PANTHER K+ TRANSPORTER 1-RELATED 6 860 - -
Cpe04g01174 862 ProSiteProfiles KHA domain profile. 793 862 IPR021789 -
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Cpe04g01174 862 MobiDBLite consensus disorder prediction 730 755 - -
Cpe04g01174 862 PRINTS Ankyrin repeat signature 662 676 IPR002110 GO:0005515
Cpe04g01174 862 PRINTS Ankyrin repeat signature 550 565 IPR002110 GO:0005515
Cpe04g01174 862 MobiDBLite consensus disorder prediction 741 755 - -
Cpe04g01174 862 PANTHER POTASSIUM CHANNEL AKT1 6 860 IPR045319 GO:0005249|GO:0006813
Cpe04g01174 862 ProSiteProfiles cAMP/cGMP binding motif profile. 380 471 IPR000595 -
Cpe04g01174 862 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cpe04g01174 862 SUPERFAMILY Ankyrin repeat 520 699 IPR036770 -
Cpe04g01174 862 SMART cnmp_10 380 486 IPR000595 -
Cpe04g01174 862 Gene3D Jelly Rolls 344 495 IPR014710 -
Cpe04g01174 862 Pfam Ion transport protein 63 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe04g01174 862 Pfam KHA, dimerisation domain of potassium ion channel 793 855 IPR021789 -
Cpe04g01174 862 SUPERFAMILY cAMP-binding domain-like 306 490 IPR018490 -
Cpe04g01174 862 Pfam Ankyrin repeats (3 copies) 521 610 IPR002110 GO:0005515
Cpe04g01174 862 Pfam Ankyrin repeats (3 copies) 621 695 IPR002110 GO:0005515
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat profile. 646 678 IPR002110 GO:0005515
Cpe04g01174 862 Gene3D - 517 701 IPR036770 -
Cpe04g01174 862 SMART ANK_2a 646 675 IPR002110 GO:0005515
Cpe04g01174 862 SMART ANK_2a 582 611 IPR002110 GO:0005515
Cpe04g01174 862 SMART ANK_2a 549 578 IPR002110 GO:0005515
Cpe04g01174 862 SMART ANK_2a 613 642 IPR002110 GO:0005515
Cpe04g01174 862 SMART ANK_2a 516 545 IPR002110 GO:0005515
Cpe04g01174 862 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02003 Cpe-Chr1:17087648 Cpe04g01174 Cpe-Chr4:10007142 1.07E-121 dispersed
Cpe04g01174 Cpe-Chr4:10007142 Cpe20g00503 Cpe-Chr20:2920730 1.36E-06 dispersed
Cpe18g00465 Cpe-Chr18:5605324 Cpe04g01174 Cpe-Chr4:10007142 0 wgd
Cpe04g01174 Cpe-Chr4:10007142 Cpe06g00351 Cpe-Chr6:1959125 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01174 K21867 - csv:101220784 1567.75