Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01175 | ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGCAATTTTCTTTATTTTAGTTCTTCTACGCTGTTCCTGCTTTCGACTATCAAGGATTTGCTTGTTTCCTATTCTATTTTCTTATGATTTTAATCAATCTGAAAGGATTCTCGTAATTCTGCAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATAGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAACTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGTGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA | 1044 | 42.43 | MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKAIFFILVLLRCSCFRLSRICLFPILFSYDFNQSERILVILQEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10012056 | 10014832 | - | Cp4.1LG04g09440.1 | Cpe04g01175 | 468737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01175 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 156 | IPR013083 | - | |
Cpe04g01175 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 130 | 347 | - | - | |
Cpe04g01175 | 347 | SMART | ringv_2 | 50 | 92 | IPR011016 | GO:0008270 | |
Cpe04g01175 | 347 | CDD | RING_CH-C4HC3_MARCH | 51 | 90 | - | - | |
Cpe04g01175 | 347 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cpe04g01175 | 347 | Pfam | RING-variant domain | 51 | 89 | IPR011016 | GO:0008270 | |
Cpe04g01175 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 93 | - | - | |
Cpe04g01175 | 347 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 43 | 117 | IPR011016 | GO:0008270 | |
Cpe04g01175 | 347 | SUPERFAMILY | RING/U-box | 49 | 92 | - | - | |
Cpe04g01175 | 347 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Cpe04g01175 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 130 | 347 | - | - | |
Cpe04g01175 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 93 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01175 | Cpe-Chr4:10012056 | Cpe10g00582 | Cpe-Chr10:3390404 | 1.18E-54 | dispersed | |
Cpe18g00464 | Cpe-Chr18:5597500 | Cpe04g01175 | Cpe-Chr4:10012056 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01175 | - | - | cmax:111465033 | 608.986 |