Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01175 ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGCAATTTTCTTTATTTTAGTTCTTCTACGCTGTTCCTGCTTTCGACTATCAAGGATTTGCTTGTTTCCTATTCTATTTTCTTATGATTTTAATCAATCTGAAAGGATTCTCGTAATTCTGCAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATAGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAACTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGTGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA 1044 42.43 MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKAIFFILVLLRCSCFRLSRICLFPILFSYDFNQSERILVILQEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10012056 10014832 - Cp4.1LG04g09440.1 Cpe04g01175 468737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01175 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 156 IPR013083 -
Cpe04g01175 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 130 347 - -
Cpe04g01175 347 SMART ringv_2 50 92 IPR011016 GO:0008270
Cpe04g01175 347 CDD RING_CH-C4HC3_MARCH 51 90 - -
Cpe04g01175 347 MobiDBLite consensus disorder prediction 1 43 - -
Cpe04g01175 347 Pfam RING-variant domain 51 89 IPR011016 GO:0008270
Cpe04g01175 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 93 - -
Cpe04g01175 347 ProSiteProfiles Zinc finger RING-CH-type profile. 43 117 IPR011016 GO:0008270
Cpe04g01175 347 SUPERFAMILY RING/U-box 49 92 - -
Cpe04g01175 347 MobiDBLite consensus disorder prediction 9 31 - -
Cpe04g01175 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 130 347 - -
Cpe04g01175 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01175 Cpe-Chr4:10012056 Cpe10g00582 Cpe-Chr10:3390404 1.18E-54 dispersed
Cpe18g00464 Cpe-Chr18:5597500 Cpe04g01175 Cpe-Chr4:10012056 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01175 - - cmax:111465033 608.986