Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01183 | ATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGTCACCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCGATTTTGATGAGCGGACGTAATGCCAAAACCAATTTTCCGACGACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCGTCCATGACATGTTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCTCGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGATGATTCTCTGATGGGTGTGGTTGTGGCTGATCAATCTCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTAGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACCAAATGTTTGAGATTCAACAGGGGAAGGATGTTTATCTTTAG | 615 | 48.94 | MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEDDSLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNQMFEIQQGKDVYL | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10052860 | 10053815 | - | Cp4.1LG04g09380.1 | Cpe04g01183 | 468745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01183 | 204 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cpe04g01183 | 204 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cpe04g01183 | 204 | CDD | AP2 | 5 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677 | |
Cpe04g01183 | 204 | Pfam | AP2 domain | 6 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01183 | 204 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01183 | Cpe11g01069 | CCT | |
Cpe04g01183 | Cpe11g01069 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01183 | Cpe-Chr4:10052860 | Cpe11g00306 | Cpe-Chr11:1659772 | 1.99E-31 | dispersed | |
Cpe11g01069 | Cpe-Chr11:8969543 | Cpe04g01183 | Cpe-Chr4:10052860 | 1.32E-79 | wgd | |
Cpe02g00453 | Cpe-Chr2:2565074 | Cpe04g01183 | Cpe-Chr4:10052860 | 2.52E-25 | wgd | |
Cpe04g01183 | Cpe-Chr4:10052860 | Cpe06g00343 | Cpe-Chr6:1904800 | 3.64E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49410 | PF00847 | AP2 | 1.30E-12 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01183 | - | - | bhj:120071615 | 307.375 |