Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01183 ATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGTCACCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCGATTTTGATGAGCGGACGTAATGCCAAAACCAATTTTCCGACGACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCGTCCATGACATGTTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCTCGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGATGATTCTCTGATGGGTGTGGTTGTGGCTGATCAATCTCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTAGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACCAAATGTTTGAGATTCAACAGGGGAAGGATGTTTATCTTTAG 615 48.94 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEDDSLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNQMFEIQQGKDVYL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10052860 10053815 - Cp4.1LG04g09380.1 Cpe04g01183 468745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01183 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cpe04g01183 204 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 192 - -
Cpe04g01183 204 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Cpe04g01183 204 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cpe04g01183 204 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Cpe04g01183 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cpe04g01183 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cpe04g01183 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cpe04g01183 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cpe04g01183 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01183 Cpe11g01069 CCT
Cpe04g01183 Cpe11g01069 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01183 Cpe-Chr4:10052860 Cpe11g00306 Cpe-Chr11:1659772 1.99E-31 dispersed
Cpe11g01069 Cpe-Chr11:8969543 Cpe04g01183 Cpe-Chr4:10052860 1.32E-79 wgd
Cpe02g00453 Cpe-Chr2:2565074 Cpe04g01183 Cpe-Chr4:10052860 2.52E-25 wgd
Cpe04g01183 Cpe-Chr4:10052860 Cpe06g00343 Cpe-Chr6:1904800 3.64E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49410 PF00847 AP2 1.30E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01183 - - bhj:120071615 307.375