Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01191 ATGTCGAGCTGCATCGATATTGCACCGGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGTTCATAAAAGAGGAAATCCGAAGGATCAAGGCGAAGAACCCTGAGATTAGTCATAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTATTAAACAAATGA 519 42.2 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10087072 10089482 - Cp4.1LG04g09420.1 Cpe04g01191 468753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01191 172 PANTHER AXIAL REGULATOR YABBY 5 1 102 - -
Cpe04g01191 172 PANTHER AXIAL REGULATOR YABBY 5 103 163 - -
Cpe04g01191 172 Pfam YABBY protein 104 146 IPR006780 GO:0007275
Cpe04g01191 172 Pfam YABBY protein 9 74 IPR006780 GO:0007275
Cpe04g01191 172 PANTHER PROTEIN YABBY 6-RELATED 103 163 IPR006780 GO:0007275
Cpe04g01191 172 PANTHER PROTEIN YABBY 6-RELATED 1 102 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01191 Cpe-Chr4:10087072 Cpe05g00455 Cpe-Chr5:2635623 6.15E-45 dispersed
Cpe09g00228 Cpe-Chr9:1313947 Cpe04g01191 Cpe-Chr4:10087072 1.39E-28 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe04g01191 Cpe-Chr4:10087072 3.17E-77 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe04g01191 Cpe-Chr4:10087072 2.76E-82 wgd
Cpe04g01191 Cpe-Chr4:10087072 Cpe07g01105 Cpe-Chr7:9727251 1.99E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49411 PF04690 YABBY 7.30E-26 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01191 K25796 - csv:101215951 293.893