Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01239 ATGACTGTGGAGACTCATTCCGTTACTTCTGTCGGTGATGATGGTGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTGCTTGAAACTCTCCTCCGTAGATGCCAATACCATGTTACCACGACGAAGCAGTCCATTGAGGCTTTGAAAATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCGCATGGGGCATGTGATTATCTGTTGAAACCGGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGGAAGAAGCTCGAACCGAAGGCAAAGAACAAGTTCCCTAGTGAAGATAAGGCTCTTAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCGAAATTCAATAGGAAACGGAAGGACCAAGACGACGATGACGATGAAGATGGAAAGGATAACGGGCTTGATAATGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAAGAAATTCGTTTCAGCGGTTAATCAGTTGGGTCTCGAAAAGGCTGTGCCTAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAACGTAGCAAATTCAACCAGAAAACAAGATGGAGCTAAGAGCGTCTATGTTGTATTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAGCAAGTTAGCATGGTTGCTACGTTTGGGAGTAAAGACGGCGCGTTCATGGGGATGGGTTCGCTCGATGGATATGGAGATTTACATGGCTTTGCAGGAATGGGACGGCTTCAAAACTCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGTCTGCGTGGAATCACTTCTTCTGGACTGATACAGCAAAACTCCAAAAATTTGAACTCCGCCATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTCCTAACCAACCTACTAATCTGTTGCAAGGAATTCCGACGTCGCTCGAGCTCAGCCAGCTGCAACACAGCAAGTCCACCATTCCTATTGGAGACTTCAATATAATAAATGAGACGTCTGGGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAACTCAACCAATTTGGTTTCCACTGCCCCGTTGATGTTACAAGGAACCATGCCAACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTGAATGGAGAAACTTTTGACGTAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAACCTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCCAATTCTTTGAATCAAAATCAAGCCTATCCTAATGATCAATTCAATGCAATAAACTCAAGCATTTCTTTGACCCCCTCAACGTTTGGGAATGTCTCGGTTGATTTTTCCTCGAGAAGTGCAGTTGCAGCTCCCTTGCAGGATTCAAGAGATATGCAGTGTCAGGCAGGGGTAGTTGGCAGTGTTATTCCAACTATAAATACCATGCCGAAGCAGAGTTGGGAAGAGCTTAAACACGATTACAGTCGAAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTAATTTCTGGGAATGAGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATCTAGTATATGATAGAAAGGTGAGTTCATCTTTGATGGTCCCATCAAATGCTGCTCCACTGTCCTTCGCTCAACATAACATGGTCGAAAAATTGGGTCCTAACACGAAGACGAATGTGGATGGCAACTATCTGTTGAATCAAACAAAGTCACACGATGGGTCGACTCAGGGCAGTTCCGAGTCCTTGGATTATATAATGAATGCGATGATCAAACGGGTATAG 2067 44.27 MTVETHSVTSVGDDGATDRFPVGMRVLAVDDDPICLKVLETLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSEDKALNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDDDEDGKDNGLDNDDPSNQKKPRVVWSVELHKKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVANSTRKQDGAKSVYVVLQKYRLYLKRISNVASQQVSMVATFGSKDGAFMGMGSLDGYGDLHGFAGMGRLQNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSKNLNSAISNLGKLQPTTMLPPNQPTNLLQGIPTSLELSQLQHSKSTIPIGDFNIINETSGFGVPNSFPDSRVNIGNSTNLVSTAPLMLQGTMPTYGNQTSLRVDPLNGETFDVDIGGSNFLDPDPSNGTWQGAAQLSRFSANSLNQNQAYPNDQFNAINSSISLTPSTFGNVSVDFSSRSAVAAPLQDSRDMQCQAGVVGSVIPTINTMPKQSWEELKHDYSRNVQHNLGAINSLISGNETLNPLSQSFNQNNLVYDRKVSSSLMVPSNAAPLSFAQHNMVEKLGPNTKTNVDGNYLLNQTKSHDGSTQGSSESLDYIMNAMIKRV 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10362146 10365390 + Cp4.1LG04g09020.1 Cpe04g01239 468801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01239 688 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cpe04g01239 688 Gene3D - 24 184 - -
Cpe04g01239 688 Gene3D - 207 283 - -
Cpe04g01239 688 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cpe04g01239 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 687 - -
Cpe04g01239 688 SUPERFAMILY Homeodomain-like 209 260 IPR009057 -
Cpe04g01239 688 MobiDBLite consensus disorder prediction 150 210 - -
Cpe04g01239 688 CDD REC_typeB_ARR-like 26 140 - -
Cpe04g01239 688 SMART REC_2 24 136 IPR001789 GO:0000160
Cpe04g01239 688 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 256 IPR006447 GO:0003677
Cpe04g01239 688 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cpe04g01239 688 PIRSF RR_ARR_type-B 1 687 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe04g01239 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 687 IPR045279 GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01239 Cpe18g00551 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01239 Cpe-Chr4:10362146 Cpe08g00165 Cpe-Chr8:1065824 6.48E-108 dispersed
Cpe01g01323 Cpe-Chr1:7967263 Cpe04g01239 Cpe-Chr4:10362146 2.36E-06 transposed
Cpe18g00551 Cpe-Chr18:6077369 Cpe04g01239 Cpe-Chr4:10362146 7.30E-66 wgd
Cpe02g00336 Cpe-Chr2:1805259 Cpe04g01239 Cpe-Chr4:10362146 6.85E-34 wgd
Cpe04g01239 Cpe-Chr4:10362146 Cpe06g00305 Cpe-Chr6:1686684 1.28E-137 wgd
Cpe04g01239 Cpe-Chr4:10362146 Cpe07g01132 Cpe-Chr7:9932833 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49413 PF00072 Response_reg 2.00E-25 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01239 K14491 - csv:101213687 1115.14