Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01244 ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTTTTAAACAACTCTCTTCAGGATCTCCACGGTGACGACCACCACCTGAATCCGCCGCCGGAGAAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTGGCCGCTGCCTCTCACGATGACTTCCTCGAGCAAATGCTTCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCAAAGGCTGCCGTTATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCCCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGACATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAACATGATGAATCAAGCTCCAGACGGTGGGTCCGGCGGAATTTCTCCATCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGGGGGCAAGCTACAGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGCTGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGTGGAGGAAACCAAACGGCGTCGTCGAACGACAGCGTGACGGTGACGGAACAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCGATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGCCGGGCACCCAATGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA 1110 55.59 MQPCSREMQTLNSLLNNSLQDLHGDDHHLNPPPEKIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAAVMLQQQLLLSRGISSVPDHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVLSMSRLGGAAAVAPLVADVSAEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSAGHPMMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10387802 10390872 + Cp4.1LG04g09000.1 Cpe04g01244 468806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01244 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 250 IPR011598 GO:0046983
Cpe04g01244 369 MobiDBLite consensus disorder prediction 325 369 - -
Cpe04g01244 369 MobiDBLite consensus disorder prediction 152 190 - -
Cpe04g01244 369 MobiDBLite consensus disorder prediction 340 369 - -
Cpe04g01244 369 MobiDBLite consensus disorder prediction 254 279 - -
Cpe04g01244 369 PANTHER TRANSCRIPTION FACTOR BHLH69 158 328 - -
Cpe04g01244 369 MobiDBLite consensus disorder prediction 18 41 - -
Cpe04g01244 369 MobiDBLite consensus disorder prediction 258 279 - -
Cpe04g01244 369 Gene3D - 185 239 IPR036638 GO:0046983
Cpe04g01244 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 230 IPR036638 GO:0046983
Cpe04g01244 369 MobiDBLite consensus disorder prediction 152 198 - -
Cpe04g01244 369 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 158 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01244 Cpe-Chr4:10387802 Cpe11g01019 Cpe-Chr11:8583989 3.08E-76 dispersed
Cpe18g00556 Cpe-Chr18:6104913 Cpe04g01244 Cpe-Chr4:10387802 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49414 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01244 - - csv:101211609 575.089