Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01246 | ATGGGGGCCAGATGTCCTCTTGCTCCGTTCCTCTCTATAATGGGTACCCCCTCCATTTTTCATCCTCTGATGGACAAATGGAACAACAACACTGGCGGAGTTGAAGCGGCCTCTCTAAACATCCAAGCGAGTTTTGCAGATTTTGTTTTGGTTTTTACTTTCCTAAAACGAAAAATTTCTTGCCGTCGTGGGCTACTACTTGGAGAAGGGTGTGAGACTGGACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCCTGAAGGTCCTGCCGTTTTCGAGTCCCAGATATGGAGCTTCCAAACCGGAAAATTTCCCCATTCAGCACTTGCTTGACGTTGGGAGGCAGCAGCCTGCTTATTTTTCTCTTCACTTTAGATTCGCTATCATAACCACCACCCCCACTGTCCGAACCACCATGAAACAGAAGTGGCCAAATACGATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGAATCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTGCCTCAACAAAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGCATTTGGCTTGGGACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCCCTCTGCTGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACAATAGAAAACGTAGAACGTGTCGATGACGATCGTGATGTGCAGCTGATATTTTTTGACAAAACAATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTGGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCTGAAGAATTGTTATCGCCTAAGAACAAAGACGATGGACTAAAAGGCGATGCTGAAGTTGAGGGGTTCAAATTGTTTGGAGTGCATATTAAGTGA | 1398 | 43.49 | MGARCPLAPFLSIMGTPSIFHPLMDKWNNNTGGVEAASLNIQASFADFVLVFTFLKRKISCRRGLLLGEGCETGPTRVLNMATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIITTTPTVRTTMKQKWPNTISETRVNAIAEGSESSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGPSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTIENVERVDDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAEELLSPKNKDDGLKGDAEVEGFKLFGVHIK | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10401412 | 10409778 | + | Cp4.1LG04g08810.1 | Cpe04g01246 | 468808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01246 | 465 | PANTHER | DNA-BINDING PROTEIN RAV1 | 143 | 435 | - | - | |
Cpe04g01246 | 465 | CDD | AP2 | 186 | 244 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01246 | 465 | Pfam | B3 DNA binding domain | 308 | 409 | IPR003340 | GO:0003677 | |
Cpe04g01246 | 465 | ProSiteProfiles | AP2/ERF domain profile. | 187 | 242 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01246 | 465 | Pfam | AP2 domain | 186 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01246 | 465 | Gene3D | AP2/ERF domain | 186 | 243 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe04g01246 | 465 | SMART | B3_2 | 308 | 423 | IPR003340 | GO:0003677 | |
Cpe04g01246 | 465 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 143 | 435 | IPR044800 | GO:0003700 | |
Cpe04g01246 | 465 | SMART | rav1_2 | 187 | 248 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01246 | 465 | SUPERFAMILY | DNA-binding pseudobarrel domain | 307 | 407 | IPR015300 | - | |
Cpe04g01246 | 465 | SUPERFAMILY | DNA-binding domain | 186 | 243 | IPR016177 | GO:0003677 | |
Cpe04g01246 | 465 | Gene3D | - | 303 | 434 | IPR015300 | - | |
Cpe04g01246 | 465 | CDD | B3_DNA | 307 | 419 | IPR003340 | GO:0003677 | |
Cpe04g01246 | 465 | ProSiteProfiles | B3 DNA-binding domain profile. | 308 | 423 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01766 | Cpe-Chr1:13371389 | Cpe04g01246 | Cpe-Chr4:10401412 | 1.98E-56 | dispersed | |
Cpe04g00940 | Cpe-Chr4:8490907 | Cpe04g01246 | Cpe-Chr4:10401412 | 5.55E-101 | dispersed | |
Cpe04g01246 | Cpe-Chr4:10401412 | Cpe13g00343 | Cpe-Chr13:3208495 | 4.84E-55 | dispersed | |
Cpe18g00558 | Cpe-Chr18:6114418 | Cpe04g01246 | Cpe-Chr4:10401412 | 2.42E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49415 | PF02362 | B3 | 1.90E-24 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01246 | K09287 | - | csv:101212246 | 538.11 |