Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01246 ATGGGGGCCAGATGTCCTCTTGCTCCGTTCCTCTCTATAATGGGTACCCCCTCCATTTTTCATCCTCTGATGGACAAATGGAACAACAACACTGGCGGAGTTGAAGCGGCCTCTCTAAACATCCAAGCGAGTTTTGCAGATTTTGTTTTGGTTTTTACTTTCCTAAAACGAAAAATTTCTTGCCGTCGTGGGCTACTACTTGGAGAAGGGTGTGAGACTGGACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCCTGAAGGTCCTGCCGTTTTCGAGTCCCAGATATGGAGCTTCCAAACCGGAAAATTTCCCCATTCAGCACTTGCTTGACGTTGGGAGGCAGCAGCCTGCTTATTTTTCTCTTCACTTTAGATTCGCTATCATAACCACCACCCCCACTGTCCGAACCACCATGAAACAGAAGTGGCCAAATACGATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGAATCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTGCCTCAACAAAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGCATTTGGCTTGGGACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCCCTCTGCTGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACAATAGAAAACGTAGAACGTGTCGATGACGATCGTGATGTGCAGCTGATATTTTTTGACAAAACAATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTGGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCTGAAGAATTGTTATCGCCTAAGAACAAAGACGATGGACTAAAAGGCGATGCTGAAGTTGAGGGGTTCAAATTGTTTGGAGTGCATATTAAGTGA 1398 43.49 MGARCPLAPFLSIMGTPSIFHPLMDKWNNNTGGVEAASLNIQASFADFVLVFTFLKRKISCRRGLLLGEGCETGPTRVLNMATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIITTTPTVRTTMKQKWPNTISETRVNAIAEGSESSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGPSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTIENVERVDDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAEELLSPKNKDDGLKGDAEVEGFKLFGVHIK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10401412 10409778 + Cp4.1LG04g08810.1 Cpe04g01246 468808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01246 465 PANTHER DNA-BINDING PROTEIN RAV1 143 435 - -
Cpe04g01246 465 CDD AP2 186 244 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Pfam B3 DNA binding domain 308 409 IPR003340 GO:0003677
Cpe04g01246 465 ProSiteProfiles AP2/ERF domain profile. 187 242 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Pfam AP2 domain 186 233 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Gene3D AP2/ERF domain 186 243 IPR036955 GO:0003700|GO:0006355
Cpe04g01246 465 SMART B3_2 308 423 IPR003340 GO:0003677
Cpe04g01246 465 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 143 435 IPR044800 GO:0003700
Cpe04g01246 465 SMART rav1_2 187 248 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 SUPERFAMILY DNA-binding pseudobarrel domain 307 407 IPR015300 -
Cpe04g01246 465 SUPERFAMILY DNA-binding domain 186 243 IPR016177 GO:0003677
Cpe04g01246 465 Gene3D - 303 434 IPR015300 -
Cpe04g01246 465 CDD B3_DNA 307 419 IPR003340 GO:0003677
Cpe04g01246 465 ProSiteProfiles B3 DNA-binding domain profile. 308 423 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01246 K09287 RAV; RAV-like factor - csv:101212246 538.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01766 Cpe-Chr1:13371389 Cpe04g01246 Cpe-Chr4:10401412 1.98E-56 dispersed
Cpe04g00940 Cpe-Chr4:8490907 Cpe04g01246 Cpe-Chr4:10401412 5.55E-101 dispersed
Cpe04g01246 Cpe-Chr4:10401412 Cpe13g00343 Cpe-Chr13:3208495 4.84E-55 dispersed
Cpe18g00558 Cpe-Chr18:6114418 Cpe04g01246 Cpe-Chr4:10401412 2.42E-168 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g00992 CCT,ECH 1 147 RAV Transcription Factor Family AT2G36080 64.4 1.8e-48 189.5
Cpe03g00288 . 1 159 RAV Transcription Factor Family AT2G36080 59.6 3.3e-47 185.3
Cpe12g00470 . 73 184 RAV Transcription Factor Family AT2G36080 71.3 5.5e-42 167.9
Cpe17g00919 . 93 211 RAV Transcription Factor Family AT2G36080 66.4 4.7e-41 164.9
Cpe05g00757 . 53 162 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Cpe14g00507 CCT,ECH 28 134 RAV Transcription Factor Family AT2G36080 70.3 9.8e-39 157.1
Cpe09g00275 CST 161 296 RAV Transcription Factor Family AT2G36080 58.1 3.7e-38 155.2
Cpe01g01350 . 172 295 RAV Transcription Factor Family AT2G36080 60.0 1.2e-36 150.2
Cpe05g00757 . 53 169 RAV Transcription Factor Family AT2G46870 87.3 5.4e-56 215.3
Cpe12g00470 . 73 298 RAV Transcription Factor Family AT2G46870 54.1 5.4e-56 215.3
Cpe17g00919 . 98 214 RAV Transcription Factor Family AT2G46870 79.8 1.8e-51 200.3
Cpe14g00507 CCT,ECH 28 144 RAV Transcription Factor Family AT2G46870 77.0 2.2e-49 193.4
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT2G46870 67.2 7.8e-39 158.3
Cpe08g00992 CCT,ECH 36 164 RAV Transcription Factor Family AT2G46870 60.6 7.8e-39 158.3
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Cpe01g01766 CST 165 276 RAV Transcription Factor Family AT2G46870 66.1 1.5e-37 154.1
Cpe03g00288 . 37 155 RAV Transcription Factor Family AT2G46870 63.1 5.6e-37 152.1
Cpe08g00992 CCT,ECH 1 151 RAV Transcription Factor Family AT3G11580 57.5 1.9e-45 179.9
Cpe03g00288 . 1 166 RAV Transcription Factor Family AT3G11580 58.3 3.0e-43 172.6
Cpe17g00919 . 84 221 RAV Transcription Factor Family AT3G11580 57.7 4.8e-41 165.2
Cpe12g00470 . 69 184 RAV Transcription Factor Family AT3G11580 63.8 4.0e-40 162.2
Cpe05g00757 . 53 164 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Cpe14g00507 CCT,ECH 10 134 RAV Transcription Factor Family AT3G11580 58.4 2.9e-38 156.0
Cpe05g00757 . 52 169 RAV Transcription Factor Family AT3G61970 79.3 1.3e-51 200.7
Cpe12g00470 . 74 298 RAV Transcription Factor Family AT3G61970 52.8 9.5e-50 194.5
Cpe17g00919 . 96 207 RAV Transcription Factor Family AT3G61970 82.6 3.6e-49 192.6
Cpe14g00507 CCT,ECH 17 135 RAV Transcription Factor Family AT3G61970 75.6 3.1e-48 189.5
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Cpe01g01766 CST 164 276 RAV Transcription Factor Family AT3G61970 66.1 8.3e-38 154.8
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Cpe05g00757 . 54 169 RAV Transcription Factor Family AT4G01500 67.5 6.2e-42 168.7
Cpe17g00919 . 89 214 RAV Transcription Factor Family AT4G01500 64.2 1.8e-41 167.2
Cpe14g00507 CCT,ECH 15 134 RAV Transcription Factor Family AT4G01500 62.7 9.9e-40 161.4
Cpe03g00288 . 32 233 RAV Transcription Factor Family AT5G06250 52.7 3.8e-50 195.7
Cpe08g00992 CCT,ECH 33 234 RAV Transcription Factor Family AT5G06250 52.2 1.1e-49 194.1
Cpe17g00919 . 99 207 RAV Transcription Factor Family AT5G06250 66.4 6.1e-40 161.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Cpe09g00275 CST 164 292 RAV Transcription Factor Family AT5G06250 60.3 1.8e-39 160.2
Cpe14g00507 CCT,ECH 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Cpe01g01350 . 169 282 RAV Transcription Factor Family AT5G06250 61.5 4.4e-38 155.6
Cpe04g01246 . 187 465 RAV Transcription Factor Family AT1G50680 54.7 1.9e-83 306.6
Cpe04g00940 CCT,CST,ECH 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Cpe04g01246 . 179 465 RAV Transcription Factor Family AT1G51120 52.2 1.7e-82 303.5
Cpe04g00940 CCT,CST,ECH 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.1e-79 292.0
Cpe01g01350 . 27 338 RAV Transcription Factor Family AT1G13260 66.7 4.4e-107 385.2
Cpe09g00275 CST 17 337 RAV Transcription Factor Family AT1G13260 62.3 1.3e-98 357.1
Cpe13g00343 . 36 331 RAV Transcription Factor Family AT1G13260 61.3 4.0e-92 335.5
Cpe01g01766 CST 40 325 RAV Transcription Factor Family AT1G13260 62.4 1.8e-89 326.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G13260 64.5 5.6e-38 155.6
Cpe05g00757 . 55 168 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Cpe17g00919 . 100 208 RAV Transcription Factor Family AT1G13260 70.0 1.3e-37 154.5
Cpe12g00470 . 72 184 RAV Transcription Factor Family AT1G13260 67.5 2.8e-37 153.3
Cpe01g01350 . 28 305 RAV Transcription Factor Family AT3G25730 67.0 1.5e-96 350.1
Cpe09g00275 CST 16 304 RAV Transcription Factor Family AT3G25730 64.4 5.0e-92 335.1
Cpe01g01766 CST 37 323 RAV Transcription Factor Family AT3G25730 60.3 4.9e-87 318.5
Cpe13g00343 . 36 297 RAV Transcription Factor Family AT3G25730 63.9 9.2e-86 314.3
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT3G25730 63.1 3.2e-38 156.4
Cpe01g01350 . 22 339 RAV Transcription Factor Family AT1G68840 62.8 2.6e-107 386.0
Cpe09g00275 CST 11 338 RAV Transcription Factor Family AT1G68840 62.1 1.6e-104 376.7
Cpe13g00343 . 1 332 RAV Transcription Factor Family AT1G68840 55.9 1.8e-92 336.7
Cpe01g01766 CST 29 326 RAV Transcription Factor Family AT1G68840 59.0 1.0e-90 330.9
Cpe17g00919 . 84 208 RAV Transcription Factor Family AT1G68840 60.6 4.0e-39 159.5
Cpe12g00470 . 76 184 RAV Transcription Factor Family AT1G68840 69.4 2.6e-38 156.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G68840 62.8 9.8e-38 154.8
Cpe14g00507 CCT,ECH 20 134 RAV Transcription Factor Family AT1G68840 64.4 2.4e-36 150.2
Cpe01g01350 . 28 305 RAV Transcription Factor Family AT3G25730 67.0 1.5e-96 350.1
Cpe09g00275 CST 16 304 RAV Transcription Factor Family AT3G25730 64.4 5.0e-92 335.1
Cpe01g01766 CST 37 323 RAV Transcription Factor Family AT3G25730 60.3 4.9e-87 318.5
Cpe13g00343 . 36 297 RAV Transcription Factor Family AT3G25730 63.9 9.2e-86 314.3
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT3G25730 63.1 3.2e-38 156.4
Cpe04g01246 . 179 465 RAV Transcription Factor Family AT1G51120 52.2 1.7e-82 303.5
Cpe04g00940 CCT,CST,ECH 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.1e-79 292.0
Cpe08g00992 CCT,ECH 1 151 RAV Transcription Factor Family AT3G11580 57.5 1.9e-45 179.9
Cpe03g00288 . 1 166 RAV Transcription Factor Family AT3G11580 58.3 3.0e-43 172.6
Cpe17g00919 . 84 221 RAV Transcription Factor Family AT3G11580 57.7 4.8e-41 165.2
Cpe12g00470 . 69 184 RAV Transcription Factor Family AT3G11580 63.8 4.0e-40 162.2
Cpe05g00757 . 53 164 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Cpe14g00507 CCT,ECH 10 134 RAV Transcription Factor Family AT3G11580 58.4 2.9e-38 156.0
Cpe05g00757 . 54 169 RAV Transcription Factor Family AT4G01500 67.5 6.2e-42 168.7
Cpe17g00919 . 89 214 RAV Transcription Factor Family AT4G01500 64.2 1.8e-41 167.2
Cpe14g00507 CCT,ECH 15 134 RAV Transcription Factor Family AT4G01500 62.7 9.9e-40 161.4
Cpe08g00992 CCT,ECH 1 147 RAV Transcription Factor Family AT2G36080 64.4 1.8e-48 189.5
Cpe03g00288 . 1 159 RAV Transcription Factor Family AT2G36080 59.6 3.3e-47 185.3
Cpe12g00470 . 73 184 RAV Transcription Factor Family AT2G36080 71.3 5.5e-42 167.9
Cpe17g00919 . 93 211 RAV Transcription Factor Family AT2G36080 66.4 4.7e-41 164.9
Cpe05g00757 . 53 162 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Cpe14g00507 CCT,ECH 28 134 RAV Transcription Factor Family AT2G36080 70.3 9.8e-39 157.1
Cpe09g00275 CST 161 296 RAV Transcription Factor Family AT2G36080 58.1 3.7e-38 155.2
Cpe01g01350 . 172 295 RAV Transcription Factor Family AT2G36080 60.0 1.2e-36 150.2
Cpe03g00288 . 32 233 RAV Transcription Factor Family AT5G06250 52.7 3.8e-50 195.7
Cpe08g00992 CCT,ECH 33 234 RAV Transcription Factor Family AT5G06250 52.2 1.1e-49 194.1
Cpe17g00919 . 99 207 RAV Transcription Factor Family AT5G06250 66.4 6.1e-40 161.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Cpe09g00275 CST 164 292 RAV Transcription Factor Family AT5G06250 60.3 1.8e-39 160.2
Cpe14g00507 CCT,ECH 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Cpe01g01350 . 169 282 RAV Transcription Factor Family AT5G06250 61.5 4.4e-38 155.6
Cpe05g00757 . 53 169 RAV Transcription Factor Family AT2G46870 87.3 5.4e-56 215.3
Cpe12g00470 . 73 298 RAV Transcription Factor Family AT2G46870 54.1 5.4e-56 215.3
Cpe17g00919 . 98 214 RAV Transcription Factor Family AT2G46870 79.8 1.8e-51 200.3
Cpe14g00507 CCT,ECH 28 144 RAV Transcription Factor Family AT2G46870 77.0 2.2e-49 193.4
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT2G46870 67.2 7.8e-39 158.3
Cpe08g00992 CCT,ECH 36 164 RAV Transcription Factor Family AT2G46870 60.6 7.8e-39 158.3
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Cpe01g01766 CST 165 276 RAV Transcription Factor Family AT2G46870 66.1 1.5e-37 154.1
Cpe03g00288 . 37 155 RAV Transcription Factor Family AT2G46870 63.1 5.6e-37 152.1
Cpe04g01246 . 187 465 RAV Transcription Factor Family AT1G50680 54.7 1.9e-83 306.6
Cpe04g00940 CCT,CST,ECH 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Cpe05g00757 . 52 169 RAV Transcription Factor Family AT3G61970 79.3 1.3e-51 200.7
Cpe12g00470 . 74 298 RAV Transcription Factor Family AT3G61970 52.8 9.5e-50 194.5
Cpe17g00919 . 96 207 RAV Transcription Factor Family AT3G61970 82.6 3.6e-49 192.6
Cpe14g00507 CCT,ECH 17 135 RAV Transcription Factor Family AT3G61970 75.6 3.1e-48 189.5
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Cpe01g01766 CST 164 276 RAV Transcription Factor Family AT3G61970 66.1 8.3e-38 154.8
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Cpe01g01350 . 27 338 RAV Transcription Factor Family AT1G13260 66.7 4.4e-107 385.2
Cpe09g00275 CST 17 337 RAV Transcription Factor Family AT1G13260 62.3 1.3e-98 357.1
Cpe13g00343 . 36 331 RAV Transcription Factor Family AT1G13260 61.3 4.0e-92 335.5
Cpe01g01766 CST 40 325 RAV Transcription Factor Family AT1G13260 62.4 1.8e-89 326.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G13260 64.5 5.6e-38 155.6
Cpe05g00757 . 55 168 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Cpe17g00919 . 100 208 RAV Transcription Factor Family AT1G13260 70.0 1.3e-37 154.5
Cpe12g00470 . 72 184 RAV Transcription Factor Family AT1G13260 67.5 2.8e-37 153.3
Cpe01g01350 . 22 339 RAV Transcription Factor Family AT1G68840 62.8 2.6e-107 386.0
Cpe09g00275 CST 11 338 RAV Transcription Factor Family AT1G68840 62.1 1.6e-104 376.7
Cpe13g00343 . 1 332 RAV Transcription Factor Family AT1G68840 55.9 1.8e-92 336.7
Cpe01g01766 CST 29 326 RAV Transcription Factor Family AT1G68840 59.0 1.0e-90 330.9
Cpe17g00919 . 84 208 RAV Transcription Factor Family AT1G68840 60.6 4.0e-39 159.5
Cpe12g00470 . 76 184 RAV Transcription Factor Family AT1G68840 69.4 2.6e-38 156.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G68840 62.8 9.8e-38 154.8
Cpe14g00507 CCT,ECH 20 134 RAV Transcription Factor Family AT1G68840 64.4 2.4e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49415 PF02362 B3 1.90E-24 CL0405 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01246 Cpe_Chr04 FPKM 2.38498 2.803356 2.515392 2.376892 2.187454 1.979844 2.436688 2.703975 2.396086 2.456018