Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01246 ATGGGGGCCAGATGTCCTCTTGCTCCGTTCCTCTCTATAATGGGTACCCCCTCCATTTTTCATCCTCTGATGGACAAATGGAACAACAACACTGGCGGAGTTGAAGCGGCCTCTCTAAACATCCAAGCGAGTTTTGCAGATTTTGTTTTGGTTTTTACTTTCCTAAAACGAAAAATTTCTTGCCGTCGTGGGCTACTACTTGGAGAAGGGTGTGAGACTGGACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCCTGAAGGTCCTGCCGTTTTCGAGTCCCAGATATGGAGCTTCCAAACCGGAAAATTTCCCCATTCAGCACTTGCTTGACGTTGGGAGGCAGCAGCCTGCTTATTTTTCTCTTCACTTTAGATTCGCTATCATAACCACCACCCCCACTGTCCGAACCACCATGAAACAGAAGTGGCCAAATACGATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGAATCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTGCCTCAACAAAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGCATTTGGCTTGGGACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCCCTCTGCTGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACAATAGAAAACGTAGAACGTGTCGATGACGATCGTGATGTGCAGCTGATATTTTTTGACAAAACAATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTGGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCTGAAGAATTGTTATCGCCTAAGAACAAAGACGATGGACTAAAAGGCGATGCTGAAGTTGAGGGGTTCAAATTGTTTGGAGTGCATATTAAGTGA 1398 43.49 MGARCPLAPFLSIMGTPSIFHPLMDKWNNNTGGVEAASLNIQASFADFVLVFTFLKRKISCRRGLLLGEGCETGPTRVLNMATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIITTTPTVRTTMKQKWPNTISETRVNAIAEGSESSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGPSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTIENVERVDDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAEELLSPKNKDDGLKGDAEVEGFKLFGVHIK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10401412 10409778 + Cp4.1LG04g08810.1 Cpe04g01246 468808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01246 465 PANTHER DNA-BINDING PROTEIN RAV1 143 435 - -
Cpe04g01246 465 CDD AP2 186 244 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Pfam B3 DNA binding domain 308 409 IPR003340 GO:0003677
Cpe04g01246 465 ProSiteProfiles AP2/ERF domain profile. 187 242 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Pfam AP2 domain 186 233 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 Gene3D AP2/ERF domain 186 243 IPR036955 GO:0003700|GO:0006355
Cpe04g01246 465 SMART B3_2 308 423 IPR003340 GO:0003677
Cpe04g01246 465 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 143 435 IPR044800 GO:0003700
Cpe04g01246 465 SMART rav1_2 187 248 IPR001471 GO:0003700|GO:0006355
Cpe04g01246 465 SUPERFAMILY DNA-binding pseudobarrel domain 307 407 IPR015300 -
Cpe04g01246 465 SUPERFAMILY DNA-binding domain 186 243 IPR016177 GO:0003677
Cpe04g01246 465 Gene3D - 303 434 IPR015300 -
Cpe04g01246 465 CDD B3_DNA 307 419 IPR003340 GO:0003677
Cpe04g01246 465 ProSiteProfiles B3 DNA-binding domain profile. 308 423 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01766 Cpe-Chr1:13371389 Cpe04g01246 Cpe-Chr4:10401412 1.98E-56 dispersed
Cpe04g00940 Cpe-Chr4:8490907 Cpe04g01246 Cpe-Chr4:10401412 5.55E-101 dispersed
Cpe04g01246 Cpe-Chr4:10401412 Cpe13g00343 Cpe-Chr13:3208495 4.84E-55 dispersed
Cpe18g00558 Cpe-Chr18:6114418 Cpe04g01246 Cpe-Chr4:10401412 2.42E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49415 PF02362 B3 1.90E-24 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01246 K09287 - csv:101212246 538.11