Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01247 ATGGCGGAAAAGGACAGAGACGGTCAGTCTGGTGTTCTCCATGGAAAGTATGAACTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTATCATGCCCGGAATTTGCAGACGGGGACGAACATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTGATAAAAGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGTGGCGGGGAACTGTTCTCCAAAATTTCCAGAGGCCGATTGAGAGAAGATGTGGCTAGACTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTTTGCCACAGTCGTGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCATCTGAAACAGGATGGACTGTTGCACACAACTTGTGGCACGCCGGCGTATGTTGCGCCGGAAGTTATTGGGAAGAAGGGATACAACGGCGCCAAAGCTGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAAGACGACAATATTGTGTCGATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCACCGGAAGCCCGTCGATTAATAACGAAACTCCTGGATCCGAATCCGAGCAGCAGAATTACAACATCAAAGATCATGGAGTCCTCCTGGTTCAGGAAATCCACGCCGAGGACTGTAATAACAAAAGAGGAGCAGGAATTCGACGAGAGCAAGGAGAAATTGAAGCAATCGGAGACGTTAAATGCCTTCCATATAATTTCCTTATCGGAAGGGTTCGATTTATCACCGTTGTTCGAGGAGAAAAAGAGAGAAGAGAAAGAGGAGCTGAGATTTGCGACGACAAAGCCGGCAAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCGGGGAAATTCAGCGTAAAAAAGAGCGAATCAAGAGTGAGATTACAGGGTGAAGCGTGCGGAAGAAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTAGAGGTGAAGAAAGATCACGGGGACACGTTAGAATACAGGCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATTGTGTGGACATCACCAACGGAGAAGACAGTGTCGGGTTGA 1293 49.03 MAEKDRDGQSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDVARLYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPSSRITTSKIMESSWFRKSTPRTVITKEEQEFDESKEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTKPASSVISKLEEVAKAGKFSVKKSESRVRLQGEACGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYRQFCSKELRPALKDIVWTSPTEKTVSG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10411161 10412453 - Cp4.1LG04g08720.1 Cpe04g01247 468809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01247 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 426 - -
Cpe04g01247 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01247 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cpe04g01247 430 CDD STKc_SnRK3 16 270 - -
Cpe04g01247 430 SUPERFAMILY Protein kinase-like (PK-like) 13 285 IPR011009 -
Cpe04g01247 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cpe04g01247 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01247 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cpe04g01247 430 Gene3D Transferase(Phosphotransferase) domain 1 99 298 - -
Cpe04g01247 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cpe04g01247 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cpe04g01247 430 Gene3D Kinase associated domain 1, KA1 299 421 - -
Cpe04g01247 430 CDD CIPK_C 301 416 - -
Cpe04g01247 430 Coils Coil 280 300 - -
Cpe04g01247 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01247 430 PANTHER - 8 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01247 Cpe-Chr4:10411161 Cpe11g01018 Cpe-Chr11:8572895 0 dispersed
Cpe18g00496 Cpe-Chr18:5756549 Cpe04g01247 Cpe-Chr4:10411161 2.33E-138 dispersed
Cpe18g00559 Cpe-Chr18:6124703 Cpe04g01247 Cpe-Chr4:10411161 0 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe04g01247 Cpe-Chr4:10411161 0 wgd
Cpe04g01247 Cpe-Chr4:10411161 Cpe06g00299 Cpe-Chr6:1642721 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62367 PF00069 Pkinase 1.70E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01247 - K07198 csv:101211847 810.446