Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01248 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGTCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACAGATTCATGGAAGGAAGAGAATTATGAAGTTTACTTGGGTGGAATAGTGGCTCAACTCCGTGAGCATTTAGTAGACGCATCTTTCTTGGTATTCAATTTTAGGATCTTAGAGATGCAAAGTCAGGTGGGCGATATCTTATCTAAGTTTGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAACGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTCTAGCGTTCATGCTTTCGGCTCTCTTGATTTATAGGAAGCAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAGCTTTTGCATTTTTTTTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTGTGGACAGAGCTCTCACTTTGGACTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGACCAATATTTCGAATATATGGACAAGATCCACTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATCTCCGAACTTACAAACAGGCAGAAGCAGAACTGGTTAAGATTGATGTAAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACAACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAATGGTAAAGATAGATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGCAACATGTCCTGTTGCAAATGATGTAGTTTGCTTTGAGGAGGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCGCTCAATGTGCTCCATCAGATGAATGCCTTAAGCATAGCCCAAGAGAAGTCAGAAAGTAATTCTCCTCGGAGTACGCCAGTTAGTCCTTTATTTCAGAGTACAAGTCCCAGAAAATTTTCGCTGAAGAAATTCACAATGGATAACAAAACAAAAATCCTAGAGAAGGAACAATCTAGTCCAACATCTAAATTTTCACTGTATGCTGCTAAATCTAATTCAGTATTCCAACAGGTGCCTCAATCTTCAGAGTGTTTCCCACTCGACATTTTGCAAGATTCGCCAATTTCAGAGAGTAGCGATAGGACCTCATTCAGTGCTTCGGTTGGAAGCCACTCAGTTTTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGTATCTTCATCTTTTTCGAATGCAGCATTGGCTGTTTCTCTTGCACCCGAGTCTCTCCAGACAAAGAGTCCCCTAACAGAAAGAATAGTCCCACCACCTCCTCCTCTCCCCCAACTTTCCACGAATATTTCTGCTGCTAATTCTCTAACTTATCCTTCCGCTCCTCCAACTGCCTTACCACTTCGGTCTAATAACTTTTCAACTCTAAGACCAGATAAATTCTCACTCACTGAGGTAGTAGAAAACTATTCAAAGGATCAAAGGCAGTTATCAACCGTTAGCCCCCCACTTTCTGTAACCTCAATACAGTCATGTCCACCGCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGCTAGAGTTAAAGCTTCTCTGCCACCACCCCCTCCTTTTTCTTCAACATTAGCTTCCCATCCTGCAAATGCATCCTTTTTGCCTCAACCTCCACCACCTCCTTCTCCTCCTTCAACATCCACTGTTAGTCGTAAAATTTCATCTCCAATCCCTTCACCACCACCACCTCCTCCTCCAATGGACATTACGGATCCTAAAATTTTCTCTCCCGTGCCTCCACCACCACCGCCTCCTCCTCTGACATCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTTTTCCTATGACGTCCAGCCAGGTTGGAAGTATTTCTACAACTTTGTCTATTCCTCCACCACCGCCACCTCTTCCGTTCAGACAGGATGGAAATACTTCAACATCTCCACCTGTTCCTCCTCCACCACCACCGGCTCCCACCAAGGGCTCCTCCCCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGGGGGACTTCAAAATCAGGTGAAGTGTTTCCTGGTTCTCTTTTGTCTTGGTCCTCTCTAGGGCCATGTATTTCTCCATCAACAAAGGGACGAAGTTTGTCACGCACTATAAATTCAAGAGCACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCGAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCAGCTGCAGTTCCTGCTTCTGACCAGAACCGGAAGTCGGGTGGACGTGGTTCTGTTGGGAATAAACCCGAAAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGCACCTTTGACTGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCACTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGCCCAACAAAAGAGGAAATGGATTTACTCAAGGGCTACACTGGAGAAAAGGAGATGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAGCTTCGAGTTTTCTCATTTAAAATACAGTTCATCTCTCAGATCACTGACCTCAAGAAAAGCCTGAACTTTGTCAACTCTGCAGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAGTCATGCAGACAATACTATCACTAGGAAATGCTTTAAACCAGGGAACGGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGATAAACTGCCAGAAGTTTTGGATTTTTCAAACGATCTTCCAAGCTTGGAGCCTGCATCAAAGGAACAATTAAAGGTTTTGGCAGAGGAGATGCAATCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTATGTCTGAAAATGATGGCCCTATATCCAATAATTTCCGAACGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAGTGTAGATTCTTTGATTCTTTACTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAGCAAGTTATATCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAGAACTGCAAGCAGATAGAGCTGGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGACAGGGCACATGCATAAGAGGTCAAGAACAAAACAGTTATCACGCTCCCAGATCGAGATTGGCAATGTGAAGTAA 3762 43.09 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEENYEVYLGGIVAQLREHLVDASFLVFNFRILEMQSQVGDILSKFDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFFSPMNPVPSQLRYLQYVARRNVALEWPPVDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNLRTYKQAEAELVKIDVNCHIQGDVVLECISLHDNMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNGKDRFPKDFRAEILFSEMDAATCPVANDVVCFEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALSIAQEKSESNSPRSTPVSPLFQSTSPRKFSLKKFTMDNKTKILEKEQSSPTSKFSLYAAKSNSVFQQVPQSSECFPLDILQDSPISESSDRTSFSASVGSHSVFDSEGETEVSHLKTVSSSFSNAALAVSLAPESLQTKSPLTERIVPPPPPLPQLSTNISAANSLTYPSAPPTALPLRSNNFSTLRPDKFSLTEVVENYSKDQRQLSTVSPPLSVTSIQSCPPPPSTPPLKDTIAARVKASLPPPPPFSSTLASHPANASFLPQPPPPPSPPSTSTVSRKISSPIPSPPPPPPPMDITDPKIFSPVPPPPPPPPLTSKQVESTSTSPFVPPPPPPPFPMTSSQVGSISTTLSIPPPPPPLPFRQDGNTSTSPPVPPPPPPAPTKGSSPPVPSAPPPPTLSGRGTSKSGEVFPGSLLSWSSLGPCISPSTKGRSLSRTINSRAHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPASDQNRKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKAPLTDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQFFLELMQVPRVESKLRVFSFKIQFISQITDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLPSLEPASKEQLKVLAEEMQSISKGLEKVVQELSMSENDGPISNNFRTVLKEFLRFAEAEVRTLASLYSSVGRSVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHMHKRSRTKQLSRSQIEIGNVK 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10415693 10427613 - Cp4.1LG04g08710.1 Cpe04g01248 468810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01248 1253 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 884 905 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 676 710 - -
Cpe04g01248 1253 SUPERFAMILY Formin homology 2 domain (FH2 domain) 844 1221 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 653 667 - -
Cpe04g01248 1253 SMART PTEN_C2_2 197 337 IPR014020 -
Cpe04g01248 1253 ProSiteProfiles Formin homology-2 (FH2) domain profile. 831 1230 IPR015425 -
Cpe04g01248 1253 Coils Coil 1205 1225 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 396 416 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 763 791 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 1223 1253 - -
Cpe04g01248 1253 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Cpe04g01248 1253 SMART it6_source 831 1253 IPR015425 -
Cpe04g01248 1253 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 595 804 - -
Cpe04g01248 1253 Pfam Formin Homology 2 Domain 838 1205 IPR015425 -
Cpe04g01248 1253 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 719 733 - -
Cpe04g01248 1253 Gene3D Formin, FH2 domain 829 1215 IPR042201 -
Cpe04g01248 1253 Gene3D - 199 341 - -
Cpe04g01248 1253 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 595 609 - -
Cpe04g01248 1253 PANTHER FORMIN-J 1 747 - -
Cpe04g01248 1253 PANTHER FORMIN-J 722 1236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01248 - - - csv:101221713 1863.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01248 Cpe-Chr4:10415693 Cpe05g00142 Cpe-Chr5:727391 2.03E-154 dispersed
Cpe18g00562 Cpe-Chr18:6145810 Cpe04g01248 Cpe-Chr4:10415693 0 wgd
Cpe02g00327 Cpe-Chr2:1729095 Cpe04g01248 Cpe-Chr4:10415693 0 wgd
Cpe04g01248 Cpe-Chr4:10415693 Cpe06g00297 Cpe-Chr6:1626314 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe06g00927 . 82 372 Protein tyrosine phosphatase (PTP) family AT1G71860 65.2 4.9e-111 398.3
Cpe18g00937 . 13 910 Protein tyrosine phosphatase (PTP) family AT5G23720 56.8 1.7e-278 956.1
Cpe17g00126 . 60 198 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.9e-40 162.2
Cpe15g00859 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 5.8e-71 264.2
Cpe01g01265 . 104 384 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 5.6e-116 414.5
Cpe09g00392 . 111 391 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 7.8e-110 394.0
Cpe01g00998 . 533 749 Protein tyrosine phosphatase (PTP) family AT3G10940 77.6 1.8e-103 372.9
Cpe04g00550 . 143 585 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 2.0e-197 685.6
Cpe05g01529 . 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.3 2.4e-73 272.7
Cpe04g00827 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Cpe16g00749 . 43 228 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 5.1e-68 255.0
Cpe08g00726 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Cpe14g00928 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 54.5 5.8e-96 348.2
Cpe07g01040 CST 17 195 Protein tyrosine phosphatase (PTP) family AT2G35680 72.1 2.1e-74 276.6
Cpe11g01148 CST 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe11g01158 . 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe14g00928 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.2e-44 176.0
Cpe07g01040 CST 27 198 Protein tyrosine phosphatase (PTP) family AT5G56610 52.9 4.1e-43 171.8
Cpe08g00726 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.1e-43 171.8
Cpe05g01529 . 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 76.0 6.7e-76 280.8
Cpe16g00749 . 40 229 Protein tyrosine phosphatase (PTP) family AT4G03960 68.4 9.0e-73 270.4
Cpe04g00827 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Cpe18g00256 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 1.5e-54 209.9
Cpe18g00256 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.6e-77 285.0
Cpe05g01529 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.3 3.2e-57 218.8
Cpe04g00827 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Cpe16g00749 . 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.0e-52 200.7
Cpe01g01110 CCT 11 196 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.3e-61 235.3
Cpe01g00201 CCT 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe04g00296 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.8 1.8e-220 762.7
Cpe19g00640 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 3.1e-188 655.6
Cpe15g00475 CST 40 389 Protein tyrosine phosphatase (PTP) family AT3G19420 73.3 1.6e-160 563.5
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe14g00952 . 20 339 Protein tyrosine phosphatase (PTP) family AT2G35320 60.0 1.4e-109 393.3
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT3G09100 64.7 1.5e-249 859.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT3G09100 66.7 6.1e-246 847.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT5G01290 63.8 8.3e-232 800.4
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT5G01290 62.2 2.7e-230 795.4
Cpe19g00296 CCT 66 625 Protein tyrosine phosphatase (PTP) family AT5G28210 54.6 3.2e-172 602.4
Cpe10g00935 CCT 82 638 Protein tyrosine phosphatase (PTP) family AT5G28210 54.4 8.6e-170 594.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01248 Cpe_Chr04 FPKM 54.887356 62.908997 42.961128 44.728138 46.638718 41.411961 47.213223 41.763168 39.157951 37.27927