Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01248 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGTCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACAGATTCATGGAAGGAAGAGAATTATGAAGTTTACTTGGGTGGAATAGTGGCTCAACTCCGTGAGCATTTAGTAGACGCATCTTTCTTGGTATTCAATTTTAGGATCTTAGAGATGCAAAGTCAGGTGGGCGATATCTTATCTAAGTTTGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAACGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTCTAGCGTTCATGCTTTCGGCTCTCTTGATTTATAGGAAGCAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAGCTTTTGCATTTTTTTTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTGTGGACAGAGCTCTCACTTTGGACTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGACCAATATTTCGAATATATGGACAAGATCCACTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATCTCCGAACTTACAAACAGGCAGAAGCAGAACTGGTTAAGATTGATGTAAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACAACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAATGGTAAAGATAGATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGCAACATGTCCTGTTGCAAATGATGTAGTTTGCTTTGAGGAGGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCGCTCAATGTGCTCCATCAGATGAATGCCTTAAGCATAGCCCAAGAGAAGTCAGAAAGTAATTCTCCTCGGAGTACGCCAGTTAGTCCTTTATTTCAGAGTACAAGTCCCAGAAAATTTTCGCTGAAGAAATTCACAATGGATAACAAAACAAAAATCCTAGAGAAGGAACAATCTAGTCCAACATCTAAATTTTCACTGTATGCTGCTAAATCTAATTCAGTATTCCAACAGGTGCCTCAATCTTCAGAGTGTTTCCCACTCGACATTTTGCAAGATTCGCCAATTTCAGAGAGTAGCGATAGGACCTCATTCAGTGCTTCGGTTGGAAGCCACTCAGTTTTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGTATCTTCATCTTTTTCGAATGCAGCATTGGCTGTTTCTCTTGCACCCGAGTCTCTCCAGACAAAGAGTCCCCTAACAGAAAGAATAGTCCCACCACCTCCTCCTCTCCCCCAACTTTCCACGAATATTTCTGCTGCTAATTCTCTAACTTATCCTTCCGCTCCTCCAACTGCCTTACCACTTCGGTCTAATAACTTTTCAACTCTAAGACCAGATAAATTCTCACTCACTGAGGTAGTAGAAAACTATTCAAAGGATCAAAGGCAGTTATCAACCGTTAGCCCCCCACTTTCTGTAACCTCAATACAGTCATGTCCACCGCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGCTAGAGTTAAAGCTTCTCTGCCACCACCCCCTCCTTTTTCTTCAACATTAGCTTCCCATCCTGCAAATGCATCCTTTTTGCCTCAACCTCCACCACCTCCTTCTCCTCCTTCAACATCCACTGTTAGTCGTAAAATTTCATCTCCAATCCCTTCACCACCACCACCTCCTCCTCCAATGGACATTACGGATCCTAAAATTTTCTCTCCCGTGCCTCCACCACCACCGCCTCCTCCTCTGACATCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTTTTCCTATGACGTCCAGCCAGGTTGGAAGTATTTCTACAACTTTGTCTATTCCTCCACCACCGCCACCTCTTCCGTTCAGACAGGATGGAAATACTTCAACATCTCCACCTGTTCCTCCTCCACCACCACCGGCTCCCACCAAGGGCTCCTCCCCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGGGGGACTTCAAAATCAGGTGAAGTGTTTCCTGGTTCTCTTTTGTCTTGGTCCTCTCTAGGGCCATGTATTTCTCCATCAACAAAGGGACGAAGTTTGTCACGCACTATAAATTCAAGAGCACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCGAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCAGCTGCAGTTCCTGCTTCTGACCAGAACCGGAAGTCGGGTGGACGTGGTTCTGTTGGGAATAAACCCGAAAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGCACCTTTGACTGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCACTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGCCCAACAAAAGAGGAAATGGATTTACTCAAGGGCTACACTGGAGAAAAGGAGATGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAGCTTCGAGTTTTCTCATTTAAAATACAGTTCATCTCTCAGATCACTGACCTCAAGAAAAGCCTGAACTTTGTCAACTCTGCAGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAGTCATGCAGACAATACTATCACTAGGAAATGCTTTAAACCAGGGAACGGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGATAAACTGCCAGAAGTTTTGGATTTTTCAAACGATCTTCCAAGCTTGGAGCCTGCATCAAAGGAACAATTAAAGGTTTTGGCAGAGGAGATGCAATCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTATGTCTGAAAATGATGGCCCTATATCCAATAATTTCCGAACGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAGTGTAGATTCTTTGATTCTTTACTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAGCAAGTTATATCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAGAACTGCAAGCAGATAGAGCTGGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGACAGGGCACATGCATAAGAGGTCAAGAACAAAACAGTTATCACGCTCCCAGATCGAGATTGGCAATGTGAAGTAA 3762 43.09 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEENYEVYLGGIVAQLREHLVDASFLVFNFRILEMQSQVGDILSKFDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFFSPMNPVPSQLRYLQYVARRNVALEWPPVDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNLRTYKQAEAELVKIDVNCHIQGDVVLECISLHDNMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNGKDRFPKDFRAEILFSEMDAATCPVANDVVCFEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALSIAQEKSESNSPRSTPVSPLFQSTSPRKFSLKKFTMDNKTKILEKEQSSPTSKFSLYAAKSNSVFQQVPQSSECFPLDILQDSPISESSDRTSFSASVGSHSVFDSEGETEVSHLKTVSSSFSNAALAVSLAPESLQTKSPLTERIVPPPPPLPQLSTNISAANSLTYPSAPPTALPLRSNNFSTLRPDKFSLTEVVENYSKDQRQLSTVSPPLSVTSIQSCPPPPSTPPLKDTIAARVKASLPPPPPFSSTLASHPANASFLPQPPPPPSPPSTSTVSRKISSPIPSPPPPPPPMDITDPKIFSPVPPPPPPPPLTSKQVESTSTSPFVPPPPPPPFPMTSSQVGSISTTLSIPPPPPPLPFRQDGNTSTSPPVPPPPPPAPTKGSSPPVPSAPPPPTLSGRGTSKSGEVFPGSLLSWSSLGPCISPSTKGRSLSRTINSRAHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPASDQNRKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKAPLTDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQFFLELMQVPRVESKLRVFSFKIQFISQITDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLPSLEPASKEQLKVLAEEMQSISKGLEKVVQELSMSENDGPISNNFRTVLKEFLRFAEAEVRTLASLYSSVGRSVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHMHKRSRTKQLSRSQIEIGNVK 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10415693 10427613 - Cp4.1LG04g08710.1 Cpe04g01248 468810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01248 1253 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 884 905 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 676 710 - -
Cpe04g01248 1253 SUPERFAMILY Formin homology 2 domain (FH2 domain) 844 1221 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 653 667 - -
Cpe04g01248 1253 SMART PTEN_C2_2 197 337 IPR014020 -
Cpe04g01248 1253 ProSiteProfiles Formin homology-2 (FH2) domain profile. 831 1230 IPR015425 -
Cpe04g01248 1253 Coils Coil 1205 1225 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 396 416 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 763 791 - -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 1223 1253 - -
Cpe04g01248 1253 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Cpe04g01248 1253 SMART it6_source 831 1253 IPR015425 -
Cpe04g01248 1253 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 595 804 - -
Cpe04g01248 1253 Pfam Formin Homology 2 Domain 838 1205 IPR015425 -
Cpe04g01248 1253 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 719 733 - -
Cpe04g01248 1253 Gene3D Formin, FH2 domain 829 1215 IPR042201 -
Cpe04g01248 1253 Gene3D - 199 341 - -
Cpe04g01248 1253 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cpe04g01248 1253 MobiDBLite consensus disorder prediction 595 609 - -
Cpe04g01248 1253 PANTHER FORMIN-J 1 747 - -
Cpe04g01248 1253 PANTHER FORMIN-J 722 1236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01248 Cpe-Chr4:10415693 Cpe05g00142 Cpe-Chr5:727391 2.03E-154 dispersed
Cpe18g00562 Cpe-Chr18:6145810 Cpe04g01248 Cpe-Chr4:10415693 0 wgd
Cpe02g00327 Cpe-Chr2:1729095 Cpe04g01248 Cpe-Chr4:10415693 0 wgd
Cpe04g01248 Cpe-Chr4:10415693 Cpe06g00297 Cpe-Chr6:1626314 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01248 - - csv:101221713 1863.58