Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01248 | ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGTCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACAGATTCATGGAAGGAAGAGAATTATGAAGTTTACTTGGGTGGAATAGTGGCTCAACTCCGTGAGCATTTAGTAGACGCATCTTTCTTGGTATTCAATTTTAGGATCTTAGAGATGCAAAGTCAGGTGGGCGATATCTTATCTAAGTTTGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAACGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTCTAGCGTTCATGCTTTCGGCTCTCTTGATTTATAGGAAGCAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAGCTTTTGCATTTTTTTTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTGTGGACAGAGCTCTCACTTTGGACTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGACCAATATTTCGAATATATGGACAAGATCCACTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATCTCCGAACTTACAAACAGGCAGAAGCAGAACTGGTTAAGATTGATGTAAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACAACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAATGGTAAAGATAGATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGCAACATGTCCTGTTGCAAATGATGTAGTTTGCTTTGAGGAGGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCGCTCAATGTGCTCCATCAGATGAATGCCTTAAGCATAGCCCAAGAGAAGTCAGAAAGTAATTCTCCTCGGAGTACGCCAGTTAGTCCTTTATTTCAGAGTACAAGTCCCAGAAAATTTTCGCTGAAGAAATTCACAATGGATAACAAAACAAAAATCCTAGAGAAGGAACAATCTAGTCCAACATCTAAATTTTCACTGTATGCTGCTAAATCTAATTCAGTATTCCAACAGGTGCCTCAATCTTCAGAGTGTTTCCCACTCGACATTTTGCAAGATTCGCCAATTTCAGAGAGTAGCGATAGGACCTCATTCAGTGCTTCGGTTGGAAGCCACTCAGTTTTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGTATCTTCATCTTTTTCGAATGCAGCATTGGCTGTTTCTCTTGCACCCGAGTCTCTCCAGACAAAGAGTCCCCTAACAGAAAGAATAGTCCCACCACCTCCTCCTCTCCCCCAACTTTCCACGAATATTTCTGCTGCTAATTCTCTAACTTATCCTTCCGCTCCTCCAACTGCCTTACCACTTCGGTCTAATAACTTTTCAACTCTAAGACCAGATAAATTCTCACTCACTGAGGTAGTAGAAAACTATTCAAAGGATCAAAGGCAGTTATCAACCGTTAGCCCCCCACTTTCTGTAACCTCAATACAGTCATGTCCACCGCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGCTAGAGTTAAAGCTTCTCTGCCACCACCCCCTCCTTTTTCTTCAACATTAGCTTCCCATCCTGCAAATGCATCCTTTTTGCCTCAACCTCCACCACCTCCTTCTCCTCCTTCAACATCCACTGTTAGTCGTAAAATTTCATCTCCAATCCCTTCACCACCACCACCTCCTCCTCCAATGGACATTACGGATCCTAAAATTTTCTCTCCCGTGCCTCCACCACCACCGCCTCCTCCTCTGACATCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTTTTCCTATGACGTCCAGCCAGGTTGGAAGTATTTCTACAACTTTGTCTATTCCTCCACCACCGCCACCTCTTCCGTTCAGACAGGATGGAAATACTTCAACATCTCCACCTGTTCCTCCTCCACCACCACCGGCTCCCACCAAGGGCTCCTCCCCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGGGGGACTTCAAAATCAGGTGAAGTGTTTCCTGGTTCTCTTTTGTCTTGGTCCTCTCTAGGGCCATGTATTTCTCCATCAACAAAGGGACGAAGTTTGTCACGCACTATAAATTCAAGAGCACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCGAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCAGCTGCAGTTCCTGCTTCTGACCAGAACCGGAAGTCGGGTGGACGTGGTTCTGTTGGGAATAAACCCGAAAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGCACCTTTGACTGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCACTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGCCCAACAAAAGAGGAAATGGATTTACTCAAGGGCTACACTGGAGAAAAGGAGATGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAGCTTCGAGTTTTCTCATTTAAAATACAGTTCATCTCTCAGATCACTGACCTCAAGAAAAGCCTGAACTTTGTCAACTCTGCAGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAGTCATGCAGACAATACTATCACTAGGAAATGCTTTAAACCAGGGAACGGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGATAAACTGCCAGAAGTTTTGGATTTTTCAAACGATCTTCCAAGCTTGGAGCCTGCATCAAAGGAACAATTAAAGGTTTTGGCAGAGGAGATGCAATCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTATGTCTGAAAATGATGGCCCTATATCCAATAATTTCCGAACGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAGTGTAGATTCTTTGATTCTTTACTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAGCAAGTTATATCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAGAACTGCAAGCAGATAGAGCTGGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGACAGGGCACATGCATAAGAGGTCAAGAACAAAACAGTTATCACGCTCCCAGATCGAGATTGGCAATGTGAAGTAA | 3762 | 43.09 | MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEENYEVYLGGIVAQLREHLVDASFLVFNFRILEMQSQVGDILSKFDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFFSPMNPVPSQLRYLQYVARRNVALEWPPVDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNLRTYKQAEAELVKIDVNCHIQGDVVLECISLHDNMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNGKDRFPKDFRAEILFSEMDAATCPVANDVVCFEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALSIAQEKSESNSPRSTPVSPLFQSTSPRKFSLKKFTMDNKTKILEKEQSSPTSKFSLYAAKSNSVFQQVPQSSECFPLDILQDSPISESSDRTSFSASVGSHSVFDSEGETEVSHLKTVSSSFSNAALAVSLAPESLQTKSPLTERIVPPPPPLPQLSTNISAANSLTYPSAPPTALPLRSNNFSTLRPDKFSLTEVVENYSKDQRQLSTVSPPLSVTSIQSCPPPPSTPPLKDTIAARVKASLPPPPPFSSTLASHPANASFLPQPPPPPSPPSTSTVSRKISSPIPSPPPPPPPMDITDPKIFSPVPPPPPPPPLTSKQVESTSTSPFVPPPPPPPFPMTSSQVGSISTTLSIPPPPPPLPFRQDGNTSTSPPVPPPPPPAPTKGSSPPVPSAPPPPTLSGRGTSKSGEVFPGSLLSWSSLGPCISPSTKGRSLSRTINSRAHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPASDQNRKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKAPLTDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQFFLELMQVPRVESKLRVFSFKIQFISQITDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLPSLEPASKEQLKVLAEEMQSISKGLEKVVQELSMSENDGPISNNFRTVLKEFLRFAEAEVRTLASLYSSVGRSVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHMHKRSRTKQLSRSQIEIGNVK | 1253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10415693 | 10427613 | - | Cp4.1LG04g08710.1 | Cpe04g01248 | 468810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01248 | 1253 | Gene3D | Protein tyrosine phosphatase superfamily | 15 | 198 | IPR029021 | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 884 | 905 | - | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 676 | 710 | - | - | |
Cpe04g01248 | 1253 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 844 | 1221 | - | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 653 | 667 | - | - | |
Cpe04g01248 | 1253 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
Cpe04g01248 | 1253 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 831 | 1230 | IPR015425 | - | |
Cpe04g01248 | 1253 | Coils | Coil | 1205 | 1225 | - | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 396 | 416 | - | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 763 | 791 | - | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 1223 | 1253 | - | - | |
Cpe04g01248 | 1253 | Pfam | C2 domain of PTEN tumour-suppressor protein | 200 | 337 | IPR014020 | - | |
Cpe04g01248 | 1253 | SMART | it6_source | 831 | 1253 | IPR015425 | - | |
Cpe04g01248 | 1253 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 12 | 186 | IPR029021 | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 595 | 804 | - | - | |
Cpe04g01248 | 1253 | Pfam | Formin Homology 2 Domain | 838 | 1205 | IPR015425 | - | |
Cpe04g01248 | 1253 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 719 | 733 | - | - | |
Cpe04g01248 | 1253 | Gene3D | Formin, FH2 domain | 829 | 1215 | IPR042201 | - | |
Cpe04g01248 | 1253 | Gene3D | - | 199 | 341 | - | - | |
Cpe04g01248 | 1253 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
Cpe04g01248 | 1253 | MobiDBLite | consensus disorder prediction | 595 | 609 | - | - | |
Cpe04g01248 | 1253 | PANTHER | FORMIN-J | 1 | 747 | - | - | |
Cpe04g01248 | 1253 | PANTHER | FORMIN-J | 722 | 1236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01248 | Cpe-Chr4:10415693 | Cpe05g00142 | Cpe-Chr5:727391 | 2.03E-154 | dispersed | |
Cpe18g00562 | Cpe-Chr18:6145810 | Cpe04g01248 | Cpe-Chr4:10415693 | 0 | wgd | |
Cpe02g00327 | Cpe-Chr2:1729095 | Cpe04g01248 | Cpe-Chr4:10415693 | 0 | wgd | |
Cpe04g01248 | Cpe-Chr4:10415693 | Cpe06g00297 | Cpe-Chr6:1626314 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01248 | - | - | csv:101221713 | 1863.58 |