Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01252 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA 435 46.67 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10444010 10447115 + Cp4.1LG04g08750.1 Cpe04g01252 468814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01252 144 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe04g01252 144 Gene3D - 1 81 IPR014722 -
Cpe04g01252 144 PIRSF Transl_init_eIF5A 1 141 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe04g01252 144 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 140 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe04g01252 144 PANTHER BNAA07G09420D PROTEIN 1 140 - -
Cpe04g01252 144 SUPERFAMILY Nucleic acid-binding proteins 82 140 IPR012340 -
Cpe04g01252 144 MobiDBLite consensus disorder prediction 1 21 - -
Cpe04g01252 144 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 138 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe04g01252 144 Gene3D - 82 143 IPR012340 -
Cpe04g01252 144 SUPERFAMILY Translation proteins SH3-like domain 15 87 IPR008991 -
Cpe04g01252 144 TIGRFAM eIF_5A: translation elongation factor IF5A 18 86 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe04g01252 144 SMART eIF_5a_2 80 138 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01252 Cpe-Chr4:10444010 Cpe09g00204 Cpe-Chr9:1182506 1.57E-92 dispersed
Cpe18g00566 Cpe-Chr18:6172488 Cpe04g01252 Cpe-Chr4:10444010 1.00E-15 wgd
Cpe02g00325 Cpe-Chr2:1719557 Cpe04g01252 Cpe-Chr4:10444010 3.99E-72 wgd
Cpe04g01252 Cpe-Chr4:10444010 Cpe06g00296 Cpe-Chr6:1618331 1.79E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01252 K03263 K02180 csv:101210204 283.108