Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01260 ATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTCAAGGGTCAGCTAATGGACTCCGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTCGAGCCCACATTTTGCCCCATGTATGCCCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCCGATGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGATTGCCCCTGAGCAAGAGAACGAGCGCAGAGATAAAGAAAGACTGATCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTACCTGAGAAGATTGTCCACCACATCGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCTGAAGAAAATGTGGAGGCCATCTGTCAGTTCTTTAACACCATAGGTAAGCAGCTAGACGAGAATACAAAATCGCGGCGTATAAATGACATGTACTTTGGCCGACTGAAAGAATTGACTACACTCCCTCAGTTGGCTCCACGTTTGAAGTTCATGGTCCGCGATGTTCTTGATTTGCGAGCTAACAATTGGGTACCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTACTACTATCAATATCAGAAATAGTCGTGGTGTTGTGCCCGGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTGGGGGGTATGATGCCGGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTTCCTAGGGCCCGTACTGTACCTAGGGGGGCAAACGGATCTGGTATGCAGCCTTCTGGACGTGGCCAGACACAGTTGATTGGCAAAGCATCAACCTTGAATGCGAGGCTACTACCCCAGAGTACTGGTGGCCTCATTAGTAACAAGACTAGTGCTCAATTGCAGGGTGCAGGAGCATCTACTACTCGTCCTATTAACTTCGGTCAAGGGTTGGGTCATAAACCTATTACGGCAGCAATGGTCCTTCCACCTGCTGAGAGATCACAGGTTCCAGCTGCATCTTTAAAACAAGTTGATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAGGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCATCCTGAAGTTGTAAAAGAAGCCATTTCTTTAGCCCTAGAGAAAAGCCCACCCTGTGTTGAATCAGTCGTAAAGTTTCTGGCCTATTTACTCTCCAGGAAGGTTTTTACTGCGGGAGACATTGAGACTGGATGTTTGCTATATGCTTCTGTGCTCGACGACGCAGGCATTGATTTACCAAAAGCCCCAATCAATTTTGGAGTGATAATTGGGAAACTTGTTATATCTGGTAGTTTGGATTTTCAGGTGGTGAAGGAGCTCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGACATATTTGATGCTGTCTTGCAGACGCTAAGTTCCGATGTGTCTGGGCAAGGATTATTGGATTCATTGGCATCCGATATCGAGGCCTGTCGAAGTCTGGCATGTTAA 1713 45.42 ILNKLTPEKFDLLKGQLMDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMIAPEQENERRDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTLPQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGTTINIRNSRGVVPGSPGNTSPGGFPINRPGLGGMMPGMPGTRKMPGMPGMDNDNWEVPRARTVPRGANGSGMQPSGRGQTQLIGKASTLNARLLPQSTGGLISNKTSAQLQGAGASTTRPINFGQGLGHKPITAAMVLPPAERSQVPAASLKQVDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVESVVKFLAYLLSRKVFTAGDIETGCLLYASVLDDAGIDLPKAPINFGVIIGKLVISGSLDFQVVKELLKKVEDDRFRKDIFDAVLQTLSSDVSGQGLLDSLASDIEACRSLAC 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10480316 10482307 - Cp4.1LG04g08690.1 Cpe04g01260 468822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01260 570 Pfam MIF4G domain 1 220 IPR003890 GO:0003723|GO:0005515
Cpe04g01260 570 SUPERFAMILY ARM repeat 400 559 IPR016024 -
Cpe04g01260 570 SMART if4_15 1 220 IPR003890 GO:0003723|GO:0005515
Cpe04g01260 570 SMART ma3_7 405 517 IPR003891 -
Cpe04g01260 570 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 568 - -
Cpe04g01260 570 SUPERFAMILY ARM repeat 1 223 IPR016024 -
Cpe04g01260 570 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 568 IPR045208 GO:0003743
Cpe04g01260 570 Gene3D - 398 562 - -
Cpe04g01260 570 ProSiteProfiles MI domain profile. 404 526 IPR003891 -
Cpe04g01260 570 MobiDBLite consensus disorder prediction 249 264 - -
Cpe04g01260 570 Pfam MA3 domain 405 517 IPR003891 -
Cpe04g01260 570 Gene3D - 1 233 - -
Cpe04g01260 570 MobiDBLite consensus disorder prediction 248 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01260 Cpe18g00574 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01260 Cpe-Chr4:10480316 Cpe17g00259 Cpe-Chr17:1702578 6.07E-63 dispersed
Cpe18g00574 Cpe-Chr18:6203733 Cpe04g01260 Cpe-Chr4:10480316 0 wgd
Cpe02g00316 Cpe-Chr2:1669715 Cpe04g01260 Cpe-Chr4:10480316 0 wgd
Cpe04g01260 Cpe-Chr4:10480316 Cpe06g00288 Cpe-Chr6:1578984 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01260 K03260 - csv:101207520 950.658