Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01269 ATGGTCTTCTTCTTGTTCTTTCCTCTGCATTTCTTCACAGCTATGGTTCCCAAACTCTTCTGGTTGATCATTTTCTCTTCTGCTTTGCTTTGCTTCTCCTATGAACCTCGAAATCCTGAAGTGGAAGCTCTGATTCATGTGAAGGCAGCATTGAATGATCCGCACGCTGTGCTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACATGCTCCCCTGATAACCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAACTTTGTCTGGGGCGATTGGGAACCTAACAAATCTTCGCCAAGTGTTGCTGCAGAACAATAACATTTCCGGTCAAATTCCCATTGAACTTGGAGCTCTCGCATTGCTTCAAACATTAGATCTCTCAGAAAATCACTTCTCTGGCCCTATACCAGCATCCTTTGGCCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCGTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGATTTGTCTTTTAACAATCTTAGTGGACCAGTGCCTGTGTTTCCGGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAACCCTACTGAAGGTTGCTCTGGCTCCGCCAATGCCGTTGCTCTTTCTTTCTCTCTAGAATCCTCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATACTCCTAGCATTTGTAATTCTTTGGCGCAGAAAGAATCACAAGACCAAGACCATTCTAGACATCAATGTAGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGGAACTTCAGTTTCAAAGAGCTCCAATTAGCAACAGGGCATTTCAGTTCCAAAAATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGGGATGGGAGTATGGTGGCAGTGAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTGGCAGTTCATCGCAATTTGCTTCGGCTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTAGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGAGCTGATAACTGGAATGAGAGCTTTTGAATTTGGGAAAACAATTAATCAAAAAGGCGTCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAGGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCTAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTCAGAAATGGGCTGCATCCCACACTCATAATGACTTCAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACATATGCTTTGAAGAATAATGGCAACGATCGAGAACATTCAAGCATGTTGAGTTTTACAATGGACGATGATGATGATGAGCGATCTTTGGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1650 46.0 MVFFLFFPLHFFTAMVPKLFWLIIFSSALLCFSYEPRNPEVEALIHVKAALNDPHAVLSNWDEDSVDPCSWAMITCSPDNLVIGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGQIPIELGALALLQTLDLSENHFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPTEGCSGSANAVALSFSLESSPGRLRSKRIAVALGVSLSCAFLILLAFVILWRRKNHKTKTILDINVDNQEVGLVRLGNLRNFSFKELQLATGHFSSKNILGAGGFGNVYKGKLGDGSMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRELITGMRAFEFGKTINQKGVMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVQKWAASHTHNDFNVNLFHSRNSCKSTYNPTYALKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10531399 10538906 + Cp4.1LG04g12640.1 Cpe04g01269 468831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01269 549 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cpe04g01269 549 Gene3D Transferase(Phosphotransferase) domain 1 388 492 - -
Cpe04g01269 549 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Cpe04g01269 549 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Cpe04g01269 549 SUPERFAMILY Protein kinase-like (PK-like) 394 498 IPR011009 -
Cpe04g01269 549 SUPERFAMILY Protein kinase-like (PK-like) 287 397 IPR011009 -
Cpe04g01269 549 MobiDBLite consensus disorder prediction 513 549 - -
Cpe04g01269 549 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 394 - -
Cpe04g01269 549 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 393 549 - -
Cpe04g01269 549 Pfam Protein tyrosine and serine/threonine kinase 310 405 IPR001245 GO:0004672|GO:0006468
Cpe04g01269 549 Gene3D Phosphorylase Kinase; domain 1 276 383 - -
Cpe04g01269 549 ProSiteProfiles Protein kinase domain profile. 307 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01269 549 CDD TM_EGFR-like 239 272 - -
Cpe04g01269 549 SUPERFAMILY L domain-like 38 202 - -
Cpe04g01269 549 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Cpe04g01269 549 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 394 - -
Cpe04g01269 549 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 393 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01269 Cpe-Chr4:10531399 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe18g00586 Cpe-Chr18:6281911 Cpe04g01269 Cpe-Chr4:10531399 1.23E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62370 PF07714 PK_Tyr_Ser-Thr 2.30E-13 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01269 - - cmax:111485761 685.256