Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01282 ATGTTGATATCAGTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCCTTTGCTTCACCCTCTCCGCCCAATATCTTACCAATTCTAAGCGCTTTCCAAGGCCTAGACTTTCATTCACGCGAGCTTCCTTCTCTGTTCCTAACAAGCCCCGCGCTACCAAGTCCTGGAACCTTGGCCTCACTTCCAACAGAGAAGGAGTTTCCCCTGAAGAATTGGGCCGAACTGTTAGCCGATGCTTCTTGAGCAAGATTATGCTTTTGCGTGCTGAGAGCTCAGTTTTTGATCCCTTGGGAATCCGTCCAGATCTTTCTTCTGAATTAAGTTGTGGGTGGGAAAGTTTTCTTGGCTTTTGGGGGCAAACATTTGACAGTTCTTCAAGCACAAAACGAGATAAAGGTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTACAGCTCTTGGGCTATTTAGCACTATCAAGGCTTGGAATCTATATCCCTCTTGGAGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGTGGAGGCATTGGCAGACTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCATCAATTGTCTTCCAGCTTCTTACACAAATTTATCCAAAATTGCAAGAGCTTCAGAAAAGAGAAGGTGAAGCTGGGCGAAAGAAAATTCTTCAATACACTCGATATGCCTCAGTTGGGTTTGCAATTGTACAAGCAATTGGTCAAGTTCTGTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAGTGGGTGCTTTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGTAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATCTACCAGCATCCTTTGGAAGAACAGCTGCACAAGCTTTACAGGATGGTAACTATGTTGGATTGGTTGCTATTATAATCTCCTTCTTTCTATTGGTACTTGGAATCGTATATGTTCAGGAAGCAGAAAGGAAAATCCCGCTCAACTATGCTTCAAGATACACAAGCAGCGGTGGAGGGCTTCAGAAATCTGCTTACCTTCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCAACATCTACATTGTCCCTGCCGGGTACTCTAGCTCGCTTCACAGGTTTATCTGTCCTAAAGAACGCTGCATTTGCTTTAAATCCAGGAGGCTCATTCTATCTTCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGCGAACAATTGAAGCGGCAGGGTGCTTCAATTCCCCTTGTCCGTCCGGGCAAAAGTACAGCTTCGTTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTTCTTGGTTCTGCTTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACACTTAACAGCATTTCGAGGATTTGCAGGAACCTCTGTTCTCATTCTTGTCGGCTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATCTCTCAGAAGTACAAGAACATAGAGTTCTATGACATCGATAGGTATACTCCATGA 1713 44.37 MLISVREAAAASSSPLCFTLSAQYLTNSKRFPRPRLSFTRASFSVPNKPRATKSWNLGLTSNREGVSPEELGRTVSRCFLSKIMLLRAESSVFDPLGIRPDLSSELSCGWESFLGFWGQTFDSSSSTKRDKGPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQALQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSSGGGLQKSAYLPFKVNSSGVMPIIFSTSTLSLPGTLARFTGLSVLKNAAFALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10593887 10599688 - Cp4.1LG04g12930.1 Cpe04g01282 468844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01282 570 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 79 566 IPR002208 GO:0015031|GO:0016020
Cpe04g01282 570 SUPERFAMILY Preprotein translocase SecY subunit 153 551 IPR023201 -
Cpe04g01282 570 ProSitePatterns Protein secY signature 1. 212 231 IPR030659 -
Cpe04g01282 570 Gene3D SecY subunit domain 152 557 IPR023201 -
Cpe04g01282 570 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 79 566 - -
Cpe04g01282 570 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 160 557 IPR002208 GO:0015031|GO:0016020
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 285 310 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 441 463 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 530 548 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 253 276 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 161 179 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 311 334 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 402 421 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 211 231 - -
Cpe04g01282 570 PRINTS Preprotein translocase SecY subunit signature 496 514 - -
Cpe04g01282 570 ProSitePatterns Protein secY signature 2. 304 321 IPR030659 -
Cpe04g01282 570 Hamap Protein translocase subunit SecY [secY]. 149 561 IPR026593 -
Cpe04g01282 570 Pfam SecY 213 544 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01282 Cpe-Chr4:10593887 Cpe15g00039 Cpe-Chr15:262346 9.06E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01282 K10956 - csv:101222431 953.355