Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01287 ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTTGTCTCTAAACCATGCGACTCTTGCAAGACTGCCGCTGCGGCCGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGTGACACTAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCACCCGCTGCGGTCATGTGTAAGGCTGATGCTGCTGCGCTTTGTGTCACGTGCGATGCCGATATTCACTCCGCTAACCCACTTGCCCGTCGCCATGAGCGTGTTCCGGTCGAACCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAATTTTCTCATGCCCACTGAATCCAACGTCAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTATGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCACAGTGTTTCCTCTTCTTCCCTCGAAGTGGGAGTTGTTCCAGAGGGGAACTCGATGTCCGACATATCGTACCCATTGGGTCAAACACTAAGTAACGGCACGGATTCGGGTTTACCGATGTCGGTACCAGGGAACCAAGCGACTCAATTGTGTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCGAGAAAAGCTTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCGGCCGCTTCATCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA 1116 51.25 MGIEGASVVKGFRGGWGVVSKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFNFLMPTESNVSGCDGAHHHEEVEVASWLMSNPPFNSKHVDGPEIKPSADHMFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQTLSNGTDSGLPMSVPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10630461 10632356 - Cp4.1LG04g12840.1 Cpe04g01287 468849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01287 371 CDD Bbox1_BBX-like 22 65 - -
Cpe04g01287 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 371 - -
Cpe04g01287 371 Pfam B-box zinc finger 21 61 IPR000315 GO:0008270
Cpe04g01287 371 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cpe04g01287 371 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Cpe04g01287 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 371 IPR045281 GO:0009909
Cpe04g01287 371 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cpe04g01287 371 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cpe04g01287 371 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cpe04g01287 371 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cpe04g01287 371 Pfam CCT motif 298 340 IPR010402 GO:0005515
Cpe04g01287 371 CDD Bbox1_BBX-like 66 108 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01287 Cpe11g00603 CCT
Cpe04g01287 Cpe18g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01287 Cpe-Chr4:10630461 Cpe07g00334 Cpe-Chr7:2164576 4.50E-105 dispersed
Cpe11g00603 Cpe-Chr11:3621019 Cpe04g01287 Cpe-Chr4:10630461 1.12E-88 wgd
Cpe18g00605 Cpe-Chr18:6389288 Cpe04g01287 Cpe-Chr4:10630461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49417 PF00643 zf-B_box 8.20E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01287 - - csv:101214816 644.039