Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01307 | ATGAACTCTTCTTCCTCTTCTAATTCCTCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCGCCAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCTGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCACTTTTCTCCCCACCAAACGCCCCTCACTTTCTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCACCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGCGTTACAAGACATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCACTTTTCTCCCCACCAAACGCCCCTCACTTTCTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCACCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGCGTTACAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCCATTTACAGAGGTGTAACAAGGCACCACCAACATGGGAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTCAACGCAGTCACCAACTTCGACATAAGTCGCTACGACGTCAAAAGCATAGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTCCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAGCCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCACCACCAACATCCTCATCCTCCTCCTTCACAATGTTCCAACAACCTTCAAACCCCGCATCCACAATGTTCCCCCCCGTCGCCGACCTCCCTCCAACCGCCTCGCCGCCGCCGCTCCCCGAAGGCGGCGCCTACGAGCAGCACCAACAATTTGCAGCCCCAATAGCATTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA | 1626 | 54.49 | MNSSSSSNSSSSSSSSSSSSSSSSSNWLAFSLANNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPPPFHFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQHHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPLEDFLRGASTPPPLPPPFHFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQHHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLAFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSSFTMFQQPSNPASTMFPPVADLPPTASPPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10746802 | 10750467 | + | Cp4.1LG04g13010.1 | Cpe04g01307 | 468869 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01307 | 541 | PRINTS | Ethylene responsive element binding protein signature | 314 | 325 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | PRINTS | Ethylene responsive element binding protein signature | 370 | 390 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 403 | 442 | - | - | |
Cpe04g01307 | 541 | CDD | AP2 | 152 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | SMART | rav1_2 | 330 | 394 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | SMART | rav1_2 | 153 | 222 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | SUPERFAMILY | DNA-binding domain | 329 | 390 | IPR016177 | GO:0003677 | |
Cpe04g01307 | 541 | CDD | AP2 | 329 | 390 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | ProSiteProfiles | AP2/ERF domain profile. | 153 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 282 | 303 | - | - | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 109 | 146 | - | - | |
Cpe04g01307 | 541 | ProSiteProfiles | AP2/ERF domain profile. | 330 | 388 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 269 | 306 | - | - | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 124 | 220 | - | - | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 299 | 319 | - | - | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 319 | 433 | - | - | |
Cpe04g01307 | 541 | Gene3D | AP2/ERF domain | 153 | 218 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | Gene3D | AP2/ERF domain | 330 | 390 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 124 | 220 | - | - | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 299 | 319 | - | - | |
Cpe04g01307 | 541 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 319 | 433 | - | - | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 122 | 143 | - | - | |
Cpe04g01307 | 541 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cpe04g01307 | 541 | SUPERFAMILY | DNA-binding domain | 152 | 217 | IPR016177 | GO:0003677 | |
Cpe04g01307 | 541 | Pfam | AP2 domain | 330 | 380 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g01307 | 541 | Pfam | AP2 domain | 153 | 208 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01307 | Cpe-Chr4:10746802 | Cpe07g00831 | Cpe-Chr7:7531542 | 1.04E-63 | dispersed | |
Cpe04g01307 | Cpe-Chr4:10746802 | Cpe11g00106 | Cpe-Chr11:586597 | 5.64E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49419 | PF00847 | AP2 | 1.10E-09 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01307 | K09285 | - | csv:101210453 | 273.863 |