Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01307 ATGAACTCTTCTTCCTCTTCTAATTCCTCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCGCCAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCTGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCACTTTTCTCCCCACCAAACGCCCCTCACTTTCTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCACCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGCGTTACAAGACATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCACTTTTCTCCCCACCAAACGCCCCTCACTTTCTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCACCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGCGTTACAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCCATTTACAGAGGTGTAACAAGGCACCACCAACATGGGAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTCAACGCAGTCACCAACTTCGACATAAGTCGCTACGACGTCAAAAGCATAGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTCCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAGCCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCACCACCAACATCCTCATCCTCCTCCTTCACAATGTTCCAACAACCTTCAAACCCCGCATCCACAATGTTCCCCCCCGTCGCCGACCTCCCTCCAACCGCCTCGCCGCCGCCGCTCCCCGAAGGCGGCGCCTACGAGCAGCACCAACAATTTGCAGCCCCAATAGCATTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA 1626 54.49 MNSSSSSNSSSSSSSSSSSSSSSSSNWLAFSLANNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPPPFHFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQHHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPLEDFLRGASTPPPLPPPFHFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQHHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLAFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSSFTMFQQPSNPASTMFPPVADLPPTASPPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10746802 10750467 + Cp4.1LG04g13010.1 Cpe04g01307 468869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01307 541 PRINTS Ethylene responsive element binding protein signature 314 325 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 PRINTS Ethylene responsive element binding protein signature 370 390 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 MobiDBLite consensus disorder prediction 403 442 - -
Cpe04g01307 541 CDD AP2 152 216 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 SMART rav1_2 330 394 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 SMART rav1_2 153 222 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 SUPERFAMILY DNA-binding domain 329 390 IPR016177 GO:0003677
Cpe04g01307 541 CDD AP2 329 390 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 ProSiteProfiles AP2/ERF domain profile. 153 216 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 MobiDBLite consensus disorder prediction 282 303 - -
Cpe04g01307 541 MobiDBLite consensus disorder prediction 109 146 - -
Cpe04g01307 541 ProSiteProfiles AP2/ERF domain profile. 330 388 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 MobiDBLite consensus disorder prediction 269 306 - -
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 220 - -
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 299 319 - -
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 319 433 - -
Cpe04g01307 541 Gene3D AP2/ERF domain 153 218 IPR036955 GO:0003700|GO:0006355
Cpe04g01307 541 Gene3D AP2/ERF domain 330 390 IPR036955 GO:0003700|GO:0006355
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 124 220 - -
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 299 319 - -
Cpe04g01307 541 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 319 433 - -
Cpe04g01307 541 MobiDBLite consensus disorder prediction 122 143 - -
Cpe04g01307 541 MobiDBLite consensus disorder prediction 1 27 - -
Cpe04g01307 541 SUPERFAMILY DNA-binding domain 152 217 IPR016177 GO:0003677
Cpe04g01307 541 Pfam AP2 domain 330 380 IPR001471 GO:0003700|GO:0006355
Cpe04g01307 541 Pfam AP2 domain 153 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01307 Cpe-Chr4:10746802 Cpe07g00831 Cpe-Chr7:7531542 1.04E-63 dispersed
Cpe04g01307 Cpe-Chr4:10746802 Cpe11g00106 Cpe-Chr11:586597 5.64E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49419 PF00847 AP2 1.10E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01307 K09285 - csv:101210453 273.863