Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01308 TGTCTCTCGATTAAACCTCGCTTCGACGCCACAGCTGCCTCATACTCCTTTATTTTCCCCTCTTTCTCTCTCGACTCCGCCAATCTCCTCTTCAAATTTCCTCTTCCGGACCTCAATCCATGGATTCCGTCATCCGCCTTCACTTTCCCGCTATTTTCTGGTCTGTTTTCGTTCGCTTTTGGTGGTAATGTGGTGGAATCACTGTCTGCTTTCTTTTCAATATGCCTTCCGAATCTTCCTCTGAAGGAAGCTTACCATGTCCAATTACCCGAGTATCTTCGCTCATTAGAAGGAGCCTCTCTTGATCCATCAAAATGCAGTAAGACGAGCATGGAGGAGAAAAGAAATTTAGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGTCAAGAGATTCTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGAAAATATACCGGATTAACAAAACTGAAAATAGTCGAGAACCTTCTGAAGATTGTTACTGAAAAGAAATCAGGGTCAACTGAGAATGTAGCAGACCTTGACCAGCAATCTTCTTCACCCTATCTTTCTCCAAAGATTACCAAAAGGCAAAGAAAAATTGATCAGCCATCACGGCTACCAGTTCCGGAAAACAATATTCCTATCAGTAGCATTAGGAGTGACTCAAATATTGCAGTTTACTGCAGAAATTCAGCATGCAAGGCTACCTTAAATGAAGATGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGCTATCAATATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGACCCACCATTTCAAGGCACTTCATGTGGTTTGTCATGCCATCTTGAATGTGCATTGAAGCATGAAAAATCTGGAATTTCTAAAGGACAGCAGGTTGGAATTGAACGGACTTTCTATTGTCTATCATGTGGAAAAGTCAACGACTTGCTTGGGAGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACCCGAAGGGTGGATATACTGTGTTACCGCATCTCTTTAGCCAAAAAGATTTTGAGTGAAGGTGAAAAGTATCAAGATGTTTGTCGGATCGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCTTTGACTGGTGTACCGGTTGGTACGGGCAGAGGCATAGTGAACAGGCTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCACGTTAGCCATTGATACACTGGACTCCTTGCTCTCCAAGAAGATCTTGCATCAATCGCCCATTTCCATTATACAAGACACAAATTTGGTAGCTACAAACTTATTAAGGTTCGAAGATGTTGATGCAACATACCTTACAGTGGTTATGGGTACCGAAGATGTTTCTTCTGGAGAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGTGATATAGATTACCCTATAGAGCCAACTTGCATCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGACTGACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTAATGGGACAGGAGATTTGGGGATGTGTGAAGTTCAGATCTCAACTGCTAGTGCTCGGGAGGACCACCCAGGATGCTTGGTGATTGAAAGAAGTCAGAGTTCGGTTACCAACGTTAGTGAGCTCTCTAATCCTTCTTCAGTAGAAGATGAAACAAACAATGAAATGCCTTGTAGCGACCAGAGTGATAGTCAAACAGAGAACTATCTTTCTTATTGCAAAGATCCTAACAAGATTATCACTGCTAACCTGTCTAAAGATGCAATAAACTGCACTGATGTCGGTGGAGGAGAAACAGCAAAAGATTCTGTTTCTTTGTTGGATGAGAAACATGTTACAAAGAAAAGTGGCATGCTGCCTGATCCTAATGTTCCAAAACTTGAAGACAAACATTCCTCTGAGGTTCATATCATTGAAGATACAAGCGTAAATAATGGGTCAAATTCTGCCGTTCAAGAAGGAACTAAATGGCCACCATTTGTTAACAGCTCTGGGGCTGGATTGCCAGCTACTCCTTGCAAGATGGAAATACTTAAGGATGTTCTTGGAAGGAGTGGACGATCGAAGTCCAGTGCTAAGGATCGAGAAAACGGGTCTGGGGGAGACAAACTCCGACATGGCAGCAAATCTAAGAAGAGAAGTGCAGAGATTCGAGATGCCGATTGTACGGCAAATGGTATTTCAGATAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGACACATAGATAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGTTCCACAGCCCAAGAAGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA 2481 42.32 CLSIKPRFDATAASYSFIFPSFSLDSANLLFKFPLPDLNPWIPSSAFTFPLFSGLFSFAFGGNVVESLSAFFSICLPNLPLKEAYHVQLPEYLRSLEGASLDPSKCSKTSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIVENLLKIVTEKKSGSTENVADLDQQSSSPYLSPKITKRQRKIDQPSRLPVPENNIPISSIRSDSNIAVYCRNSACKATLNEDDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQGTSCGLSCHLECALKHEKSGISKGQQVGIERTFYCLSCGKVNDLLGSWRKQLMKAKETRRVDILCYRISLAKKILSEGEKYQDVCRIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCTLAIDTLDSLLSKKILHQSPISIIQDTNLVATNLLRFEDVDATYLTVVMGTEDVSSGETVGYRLWHRKACDIDYPIEPTCILSQPNLRFVVRGLTPSSEYYFKAISFNGTGDLGMCEVQISTASAREDHPGCLVIERSQSSVTNVSELSNPSSVEDETNNEMPCSDQSDSQTENYLSYCKDPNKIITANLSKDAINCTDVGGGETAKDSVSLLDEKHVTKKSGMLPDPNVPKLEDKHSSEVHIIEDTSVNNGSNSAVQEGTKWPPFVNSSGAGLPATPCKMEILKDVLGRSGRSKSSAKDRENGSGGDKLRHGSKSKKRSAEIRDADCTANGISDKDFEYYVKLIRWLECEGHIDKNFRQKFLTWYSLSSTAQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPAGFCMKLWH 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10755776 10760427 + Cp4.1LG04g12980.1 Cpe04g01308 468870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01308 826 PANTHER VIN3-LIKE PROTEIN 2-RELATED 98 826 - -
Cpe04g01308 826 SUPERFAMILY Fibronectin type III 440 515 IPR036116 GO:0005515
Cpe04g01308 826 CDD PHD_VIN3_plant 251 315 - -
Cpe04g01308 826 Pfam PHD - plant homeodomain finger protein 231 349 IPR032881 -
Cpe04g01308 826 MobiDBLite consensus disorder prediction 693 715 - -
Cpe04g01308 826 CDD FN3 439 516 IPR003961 GO:0005515
Cpe04g01308 826 MobiDBLite consensus disorder prediction 177 195 - -
Cpe04g01308 826 MobiDBLite consensus disorder prediction 548 574 - -
Cpe04g01308 826 MobiDBLite consensus disorder prediction 177 210 - -
Cpe04g01308 826 PANTHER VIN3-LIKE PROTEIN 2-RELATED 98 826 IPR044514 GO:0010048|GO:0040029
Cpe04g01308 826 MobiDBLite consensus disorder prediction 693 722 - -
Cpe04g01308 826 ProSiteProfiles Fibronectin type-III domain profile. 434 532 IPR003961 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01308 Cpe11g00638 CCT
Cpe04g01308 Cpe18g00625 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01308 Cpe-Chr4:10755776 Cpe07g00175 Cpe-Chr7:1046417 5.12E-17 dispersed
Cpe11g00638 Cpe-Chr11:4123384 Cpe04g01308 Cpe-Chr4:10755776 0 wgd
Cpe18g00625 Cpe-Chr18:6481914 Cpe04g01308 Cpe-Chr4:10755776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01308 - - csv:101220456 1212.59