Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01322 | ATGAAAGGTACTGGAAGAAGATTGACCCAGAAGGAATCTGGCAAGTGTTCTCACTCCAAGATGGAAACTGGATCAGAGTTGATATTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCGCATGCACAGGAAATTGGTTCAACATTGAAGAAGAGACCATTTCCTAAATCCTTGAGCAAGGGGAACAAAAATGTGACAATCAGACAAATGGCTGGGAAAAAATTTCTGCTAAAGAAACTTAATTCAAAATATACCAAGGACTTACTTTTGTCTAAGCTTCAAGGTGGTAAATCCCTGCCGTCATCTAGTACGGAAGGGAATGCAGAGAAGGTTGAGCCAGTGACCAAGATAAACCAACAAAGGAAAAGGAGCAAGAACAAAGGAAAAAGGGAAAAACTGGAATTAGATGAAGCTTCTCGCCTACAGAGAAGAACAAGATACCTTATTATTAAGATGAAGCTAGAGCAGAACCTTATCGATGCCTACTCTGGAGAAGGTTGGAAAGGCCAGAGCCGAGAAAAAATTAGGCCAGAAAAGGAACTCCAGAGAGCCATGAAGCAGATATTGCAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGATTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGTAAGTTGCGTGAAGCTTTTCCAGATAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCATCAAAAATGTCTGGATCCACCATTAGACACGGAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAGGGAATGAATGCACATCTTGGTACCCGGTTCTCAATGAACGTTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTAGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCCGCAGATGATGACTATGATCCAGATAAGAAGGAGATTGGCTATGACAACCTAAGTGGGGAAGAAAATGACAAGGATGTTTTTGAGGAGTCGAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCTAGCAGCAGCATAGTTTCTGATGGCTCCAATGAAGAGGGTATAACAGGTGGCCGTCGGCAACGGCAGGCTGTTGATTATAAGAAGTTATATGTCGAAATGTTTGGAAAGGATTCTACAGCACATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGGGAAAAGGAATGTGATGCTGCAAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCCGAAAATTGACGTGGAAGCTGAGAAAAGACCTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCTTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGAAAATGAACTTCCCTCTAGAGAGGTCAAGGAGAACCTTTCAATAGAGTTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACCAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCCAATAAGACTCTCAACGAGCCCAGATTAGCAGATTCAAAGGAAATGTCTGCGTGTCCTCCTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAATCGCGCAATAGTCGCTACAAGAAAAAGCAGCACAGGAAATCGTCTCTTGTGTCTTCCAACAATAACAAGGATGCTCTTGATTTAGGTGATGATATAAGCTTGAAGAATCTCTTAAAGAATAGGAAAACAAAGGTAAAGAAGAGGGTTAAATTCGTAGCTAGAGGTGGAGGTGGAGGTCGAGGTCAAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTACAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGAAGATGGGATTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAGAAGGTTTGA | 2157 | 41.31 | MKGTGRRLTQKESGKCSHSKMETGSELILPLKLKRCSKISHSKQKKSRTKSHAQEIGSTLKKRPFPKSLSKGNKNVTIRQMAGKKFLLKKLNSKYTKDLLLSKLQGGKSLPSSSTEGNAEKVEPVTKINQQRKRSKNKGKREKLELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILQCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNVSWEDIFKEEAAFPDGRNASLNHEEDWPSDDSADDDYDPDKKEIGYDNLSGEENDKDVFEESSSSTSLSWSLDGEDLTDRDGIGCEDHFGASSSIVSDGSNEEGITGGRRQRQAVDYKKLYVEMFGKDSTAHEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSPKIDVEAEKRPLNSQSRSFFRIPLYAVEKLRQVFAENELPSREVKENLSIELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTLNEPRLADSKEMSACPPSSEDAPIKELQLKSRNSRYKKKQHRKSSLVSSNNNKDALDLGDDISLKNLLKNRKTKVKKRVKFVARGGGGGRGQEAEVEMERLCKIKGRLQIMKQKLLRLSNKKEDGILDRSHMFEQSIVYVPVAVLKEKV | 718 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10856640 | 10865459 | + | Cp4.1LG04g13120.1 | Cpe04g01322 | 468884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01322 | 718 | Pfam | Homeodomain | 507 | 549 | IPR001356 | GO:0003677 | |
Cpe04g01322 | 718 | ProSiteProfiles | 'Homeobox' domain profile. | 494 | 554 | IPR001356 | GO:0003677 | |
Cpe04g01322 | 718 | Gene3D | - | 502 | 567 | - | - | |
Cpe04g01322 | 718 | SUPERFAMILY | Homeodomain-like | 496 | 560 | IPR009057 | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 405 | 419 | - | - | |
Cpe04g01322 | 718 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 294 | IPR019787 | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 106 | 120 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 350 | 372 | - | - | |
Cpe04g01322 | 718 | CDD | homeodomain | 502 | 555 | IPR001356 | GO:0003677 | |
Cpe04g01322 | 718 | SMART | HOX_1 | 496 | 558 | IPR001356 | GO:0003677 | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 106 | 145 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 329 | 385 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 38 | 74 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 402 | 422 | - | - | |
Cpe04g01322 | 718 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 291 | IPR019786 | - | |
Cpe04g01322 | 718 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 288 | IPR013083 | - | |
Cpe04g01322 | 718 | PANTHER | POLYCOMB PROTEIN PCL | 1 | 693 | - | - | |
Cpe04g01322 | 718 | Pfam | PHD-finger | 239 | 294 | IPR019787 | - | |
Cpe04g01322 | 718 | SMART | PHD_3 | 239 | 292 | IPR001965 | - | |
Cpe04g01322 | 718 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 1 | 693 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 556 | 572 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cpe04g01322 | 718 | CDD | PHD_PRHA_like | 239 | 291 | IPR045876 | - | |
Cpe04g01322 | 718 | MobiDBLite | consensus disorder prediction | 555 | 621 | - | - | |
Cpe04g01322 | 718 | SUPERFAMILY | FYVE/PHD zinc finger | 230 | 297 | IPR011011 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00416 | Cpe-Chr1:2411317 | Cpe04g01322 | Cpe-Chr4:10856640 | 4.46E-06 | dispersed | |
Cpe04g01322 | Cpe-Chr4:10856640 | Cpe14g00278 | Cpe-Chr14:1612991 | 1.03E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49420 | PF00628 | PHD | 9.60E-10 | CL0390 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01322 | - | - | cmos:111441056 | 1330.85 |