Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01322 ATGAAAGGTACTGGAAGAAGATTGACCCAGAAGGAATCTGGCAAGTGTTCTCACTCCAAGATGGAAACTGGATCAGAGTTGATATTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCGCATGCACAGGAAATTGGTTCAACATTGAAGAAGAGACCATTTCCTAAATCCTTGAGCAAGGGGAACAAAAATGTGACAATCAGACAAATGGCTGGGAAAAAATTTCTGCTAAAGAAACTTAATTCAAAATATACCAAGGACTTACTTTTGTCTAAGCTTCAAGGTGGTAAATCCCTGCCGTCATCTAGTACGGAAGGGAATGCAGAGAAGGTTGAGCCAGTGACCAAGATAAACCAACAAAGGAAAAGGAGCAAGAACAAAGGAAAAAGGGAAAAACTGGAATTAGATGAAGCTTCTCGCCTACAGAGAAGAACAAGATACCTTATTATTAAGATGAAGCTAGAGCAGAACCTTATCGATGCCTACTCTGGAGAAGGTTGGAAAGGCCAGAGCCGAGAAAAAATTAGGCCAGAAAAGGAACTCCAGAGAGCCATGAAGCAGATATTGCAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGATTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGTAAGTTGCGTGAAGCTTTTCCAGATAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCATCAAAAATGTCTGGATCCACCATTAGACACGGAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAGGGAATGAATGCACATCTTGGTACCCGGTTCTCAATGAACGTTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTAGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCCGCAGATGATGACTATGATCCAGATAAGAAGGAGATTGGCTATGACAACCTAAGTGGGGAAGAAAATGACAAGGATGTTTTTGAGGAGTCGAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCTAGCAGCAGCATAGTTTCTGATGGCTCCAATGAAGAGGGTATAACAGGTGGCCGTCGGCAACGGCAGGCTGTTGATTATAAGAAGTTATATGTCGAAATGTTTGGAAAGGATTCTACAGCACATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGGGAAAAGGAATGTGATGCTGCAAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCCGAAAATTGACGTGGAAGCTGAGAAAAGACCTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCTTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGAAAATGAACTTCCCTCTAGAGAGGTCAAGGAGAACCTTTCAATAGAGTTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACCAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCCAATAAGACTCTCAACGAGCCCAGATTAGCAGATTCAAAGGAAATGTCTGCGTGTCCTCCTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAATCGCGCAATAGTCGCTACAAGAAAAAGCAGCACAGGAAATCGTCTCTTGTGTCTTCCAACAATAACAAGGATGCTCTTGATTTAGGTGATGATATAAGCTTGAAGAATCTCTTAAAGAATAGGAAAACAAAGGTAAAGAAGAGGGTTAAATTCGTAGCTAGAGGTGGAGGTGGAGGTCGAGGTCAAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTACAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGAAGATGGGATTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAGAAGGTTTGA 2157 41.31 MKGTGRRLTQKESGKCSHSKMETGSELILPLKLKRCSKISHSKQKKSRTKSHAQEIGSTLKKRPFPKSLSKGNKNVTIRQMAGKKFLLKKLNSKYTKDLLLSKLQGGKSLPSSSTEGNAEKVEPVTKINQQRKRSKNKGKREKLELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILQCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNVSWEDIFKEEAAFPDGRNASLNHEEDWPSDDSADDDYDPDKKEIGYDNLSGEENDKDVFEESSSSTSLSWSLDGEDLTDRDGIGCEDHFGASSSIVSDGSNEEGITGGRRQRQAVDYKKLYVEMFGKDSTAHEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSPKIDVEAEKRPLNSQSRSFFRIPLYAVEKLRQVFAENELPSREVKENLSIELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTLNEPRLADSKEMSACPPSSEDAPIKELQLKSRNSRYKKKQHRKSSLVSSNNNKDALDLGDDISLKNLLKNRKTKVKKRVKFVARGGGGGRGQEAEVEMERLCKIKGRLQIMKQKLLRLSNKKEDGILDRSHMFEQSIVYVPVAVLKEKV 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10856640 10865459 + Cp4.1LG04g13120.1 Cpe04g01322 468884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01322 718 Pfam Homeodomain 507 549 IPR001356 GO:0003677
Cpe04g01322 718 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677
Cpe04g01322 718 Gene3D - 502 567 - -
Cpe04g01322 718 SUPERFAMILY Homeodomain-like 496 560 IPR009057 -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 405 419 - -
Cpe04g01322 718 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 106 120 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 350 372 - -
Cpe04g01322 718 CDD homeodomain 502 555 IPR001356 GO:0003677
Cpe04g01322 718 SMART HOX_1 496 558 IPR001356 GO:0003677
Cpe04g01322 718 MobiDBLite consensus disorder prediction 106 145 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 329 385 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 38 74 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 402 422 - -
Cpe04g01322 718 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cpe04g01322 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Cpe04g01322 718 PANTHER POLYCOMB PROTEIN PCL 1 693 - -
Cpe04g01322 718 Pfam PHD-finger 239 294 IPR019787 -
Cpe04g01322 718 SMART PHD_3 239 292 IPR001965 -
Cpe04g01322 718 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 693 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 556 572 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 1 24 - -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 1 19 - -
Cpe04g01322 718 CDD PHD_PRHA_like 239 291 IPR045876 -
Cpe04g01322 718 MobiDBLite consensus disorder prediction 555 621 - -
Cpe04g01322 718 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00416 Cpe-Chr1:2411317 Cpe04g01322 Cpe-Chr4:10856640 4.46E-06 dispersed
Cpe04g01322 Cpe-Chr4:10856640 Cpe14g00278 Cpe-Chr14:1612991 1.03E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49420 PF00628 PHD 9.60E-10 CL0390 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01322 - - cmos:111441056 1330.85