Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01327 ATGAATTACTTGGAGAATGGCGTGTACATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCGTCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATCCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAATCGGGAAAGTCAAAGAAGAAGATAGCGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGAATAAAACAGATCAGTTCAGCTATTACGATTCTTCTGCTACAAGATATTCCCCCATTGAAGTGCTGGATTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATCCCCAGAGCCCCGTGAGTATCTAA 714 43.56 MNYLENGVYMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELESGKSKKKIARYEFEQEVPLLHTPKRNKTDQFSYYDSSATRYSPIEVLDLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDPQSPVSI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10890505 10893732 - Cp4.1LG04g13390.1 Cpe04g01327 468889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01327 237 PANTHER TRANSCRIPTION FACTOR BHLH35 12 231 - -
Cpe04g01327 237 Coils Coil 78 105 - -
Cpe04g01327 237 Gene3D - 37 105 IPR036638 GO:0046983
Cpe04g01327 237 Pfam Helix-loop-helix DNA-binding domain 46 88 IPR011598 GO:0046983
Cpe04g01327 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 231 - -
Cpe04g01327 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 103 IPR036638 GO:0046983
Cpe04g01327 237 SMART finulus 45 94 IPR011598 GO:0046983
Cpe04g01327 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01327 Cpe07g00759 CCT
Cpe04g01327 Cpe11g00612 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01327 Cpe-Chr4:10890505 Cpe15g00600 Cpe-Chr15:6735586 1.26E-20 dispersed
Cpe11g00612 Cpe-Chr11:3860199 Cpe04g01327 Cpe-Chr4:10890505 5.42E-80 wgd
Cpe18g00640 Cpe-Chr18:6587133 Cpe04g01327 Cpe-Chr4:10890505 1.13E-124 wgd
Cpe04g01327 Cpe-Chr4:10890505 Cpe07g00759 Cpe-Chr7:6626873 7.86E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49422 PF00010 HLH 2.90E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01327 - - cmo:103494233 330.102