Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01336 ATGGCCGTCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGGATCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCTAAATTCAAGCGATTCATTTCCCTCCTCAACCGCACCGGCCACGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTTCCGATTCCTCTGTTTCCGTTCTCAATTCTCTCGATCCACTTCCCAGTTCCTCCACTATTGACTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACGTCGTCTCTCATGTCCACGATCACCGGCGACGGCAGCGTTTCCAATGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGCCGGCGGTTTCCTCCGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGCTCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCGCGAAGCGAAGGAAATCGGGAGTGAAAAAGACCGTACGAGTTCCGGCGATCAGTTCTAAAATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGATGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCCACGGTGCCGAGAGCGGTGGCCGATGCCAGCGTGGGTTTCGTTTCCCAGACGTGTTGA 855 54.85 MAVDLAAFPATIDDQTAIQDAASASLQSMEDLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLLNRTGHARFRRGSSSVSDSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCAKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATVPRAVADASVGFVSQTC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10951905 10953532 + Cp4.1LG04g13250.1 Cpe04g01336 468898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01336 284 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g01336 284 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 267 IPR044810 GO:0003700
Cpe04g01336 284 Pfam Plant zinc cluster domain 160 202 IPR018872 -
Cpe04g01336 284 MobiDBLite consensus disorder prediction 103 139 - -
Cpe04g01336 284 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 267 - -
Cpe04g01336 284 Gene3D WRKY domain 191 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g01336 284 SUPERFAMILY WRKY DNA-binding domain 203 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe04g01336 284 MobiDBLite consensus disorder prediction 103 161 - -
Cpe04g01336 284 SMART WRKY_cls 205 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe04g01336 284 Pfam WRKY DNA -binding domain 207 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01336 Cpe-Chr4:10951905 Cpe06g00394 Cpe-Chr6:2231470 2.46E-88 dispersed
Cpe19g01184 Cpe-Chr19:7950073 Cpe04g01336 Cpe-Chr4:10951905 4.56E-32 dispersed
Cpe18g00648 Cpe-Chr18:6631860 Cpe04g01336 Cpe-Chr4:10951905 2.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49423 PF03106 WRKY 1.00E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01336 - - mcha:111006845 383.645