Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01341 ATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTTAGCCTCGGCTCTGGATTTGGGGAATACGTCCCCAAAAAGATGCAGAAAATCAACAGTAATCATAACAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCCAAGCAAGAATTGCCCATTAATTCTTCAACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGAGCCCAACTCTCCGCCACTATAA 618 49.19 MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSSTTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAAEPNSPPL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10970697 10972063 + Cp4.1LG04g13320.1 Cpe04g01341 468903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01341 205 Coils Coil 128 162 - -
Cpe04g01341 205 SUPERFAMILY Homeodomain-like 58 130 IPR009057 -
Cpe04g01341 205 SMART HOX_1 71 133 IPR001356 GO:0003677
Cpe04g01341 205 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Cpe04g01341 205 Pfam Homeobox associated leucine zipper 129 161 IPR003106 GO:0006355|GO:0043565
Cpe04g01341 205 Pfam Homeodomain 73 127 IPR001356 GO:0003677
Cpe04g01341 205 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Cpe04g01341 205 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Cpe04g01341 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 30 190 - -
Cpe04g01341 205 CDD homeodomain 73 130 IPR001356 GO:0003677
Cpe04g01341 205 Gene3D - 77 127 - -
Cpe04g01341 205 PANTHER - 30 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01341 Cpe-Chr4:10970697 Cpe12g00802 Cpe-Chr12:7237738 7.52E-56 dispersed
Cpe18g00656 Cpe-Chr18:6660658 Cpe04g01341 Cpe-Chr4:10970697 4.09E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49424 PF00046 Homeodomain 3.20E-16 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01341 K09338 - csv:101203427 236.113