Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01345 ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTTTCTCCAGCCGCCGCCGCCCTCCCCGGCGATCCTTCTCTAAACCTTTTGCTTCCTCACCCAATTTTGTATCGCTTCAAGGCCATACAGGAAACTGTTTTCGATGCTTCTCCTTCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTCCGTTCCGACCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTTCTTCTCTACGCTAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATGGGCGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATCGATCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTCGAATGCGCCGTTTGCCTCGACAAATTCGAGCAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGACGCCCACTCCACTTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGACGTCTTATTAATTGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCGCCGCCTCCGCTGCCTCCGCCGCGGGATTCAAACTCTAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGCAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACCGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGAAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAACCAGAATCAGAATCAGAGCAGATTTGAGCACCGGATCATAGTGTCGCCGAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTCTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA 1212 54.46 MGTLPDSFLFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVAIGCFDRHRKDGLLLPDEKTNQNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGIMGKHAGKGTGLMMADV 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10985409 10986620 - Cp4.1LG04g13570.1 Cpe04g01345 468907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01345 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 380 - -
Cpe04g01345 403 Pfam Ring finger domain 161 204 IPR001841 -
Cpe04g01345 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Cpe04g01345 403 MobiDBLite consensus disorder prediction 53 72 - -
Cpe04g01345 403 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Cpe04g01345 403 PANTHER RING-H2 FINGER PROTEIN ATL43 54 380 - -
Cpe04g01345 403 MobiDBLite consensus disorder prediction 249 288 - -
Cpe04g01345 403 SUPERFAMILY RING/U-box 142 209 - -
Cpe04g01345 403 MobiDBLite consensus disorder prediction 54 72 - -
Cpe04g01345 403 MobiDBLite consensus disorder prediction 265 288 - -
Cpe04g01345 403 CDD RING-H2_PA-TM-RING 161 204 - -
Cpe04g01345 403 SMART ring_2 162 203 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01345 Cpe-Chr4:10985409 Cpe11g00456 Cpe-Chr11:2577518 3.45E-29 dispersed
Cpe12g00761 Cpe-Chr12:6955302 Cpe04g01345 Cpe-Chr4:10985409 1.32E-06 dispersed
Cpe04g01109 Cpe-Chr4:9621667 Cpe04g01345 Cpe-Chr4:10985409 8.63E-48 transposed
Cpe11g00591 Cpe-Chr11:3537602 Cpe04g01345 Cpe-Chr4:10985409 8.05E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01345 K19041 - csv:101203916 596.275