Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01354 ATGGCAAGCCCATCTCCACCGCCGGCCACCTCCACCACCTTCACCATCCTTCTCATTTTGATATCCTTTGAGGTCTTCTCATCGAAGGCTGCTTCTACAGACGCAGAAGCGCTTCTCAAGTTCAAAGGGTCTCTGGAAATGAACAATGATGTGTTGGGAAATTGGGCCGCCGGGTCCTCCCCTTGCACCGGCGACAAGGCGAACTGGGTCGGGATTCTTTGCGAGAAGGGGAATGTCTGGGGATTGAAGCTTGAAAACATGGGGCTCAAGGGTCACATTGACGTTGAGTCTCTGGAAGGGGTGCCCCAATTAAGGTCAATCAGTCTCATGAAGAATGACTTTGATGGGTCTCTGCCGGACGTCAAGAGACTCGGGGCATTGAAATCCCTGTATTTGTCAGGAAACCACTTCTCAGGGGACATTCCTGGGGATAAATTTTCAGGCATGTTGTCTTTGAAGAAAGTTCATTTGGCTCAGAACCATCTGGAGGGGCAGATTCCTTGGTCCTTGGCTGAGTTGCCACGATTGTTGGAGCTCAGGCTTGAAGCGAACCACTTTTCTGGCCAAATTCCTAATTTTGCACAGAAGACATTGAAGGTCTTTAATGTCTCCGGCAATGAACAACTTCGTGGCTCAATCCCACGAGCTTTCAGCAACTTCGATCCATCCTCCTTTACAGGCCTTCACTGTTTATGTGGAAAACCACTTGATAAGCCATGCACCACTTCAAAAATGCCATCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGAGCCGGAATAGTCATCCTTAGCCGTCGAAACCAATCGTCTTCTAATGAAGAGAATCCAGCCCACAGCAAATCTCCAAATGCTAGTGTGTCAAGTCCAGCAATCGGGTCGAGGTCACCCGATCGAGGCTCCAGTCATGGAAGCGTGGCGGGTAAACGGGCAGCCGAGAGTGCTAAGTTGTCATTTGTAAGAGATGATACAGAGAGGTTTGATTTATCAGACTTGCTTAAAGCCAATGCAGAAATCCTAGGAAGTGGATGCTTTGGATCTTCCTACAAAGCAGCCTTGACCAATGGACCTGTGATGGTTGTGAAGAGATTCAAGCAAATGAACAATGTGGACAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACCCCAACTTACTTCCTCTCGTCGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATTACAGACCATGTTGAGAAGGGTAGCTTGGCTGTTCAACTTCACGGGCACCAAGCCGTGGGACAACCAGCCATTGATTGGCCTTCAAGGTTGAAGATCATCAAGGGCGTTGCAAAGGGTCTTCGTTATCTCTATGCTGAACTTCCGAGTCTTATAACCCCACACGGCCATCTCAAGTCCTCAAATGTTCTTCTCCAGGCCAATTTTGAGCCCCTTCTTTCAGACTATGGCTTGATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCTAATGGTGGTTTACAAATCTCCCGAGTACACTCAACTAGGTCGCATCACAAAAAAGACAGACGTGTGGAGCTTTGGGATGTTGATCTTTGAGATTCTAACTGGGAAATTCCCAGCCAGCTTTCTGCGTCAGAGCAAGAGTGGCGGCGAGGAGGAAGATTTGGCAAGTTGGGTCAAATCTATTCCTGAAAAAGAATGGATCGGCCAAGTGCTTGATAAGGACATGGGGCCAACCAAGAACAGTGATGGTGAGATTACGAAGCTACTGAAGATTGCAATAGCATGTTGCGAGAGCGATTTCGAGAAGAGAATGGATTTGCGAGAGGTTGTGGAGAAGATCGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCATCATACGCAAGTGAAGCTGATATTAGATCTTCAAGAGGGTTATCTGACGAACTCAATTTCGCCATATGA 1956 47.34 MASPSPPPATSTTFTILLILISFEVFSSKAASTDAEALLKFKGSLEMNNDVLGNWAAGSSPCTGDKANWVGILCEKGNVWGLKLENMGLKGHIDVESLEGVPQLRSISLMKNDFDGSLPDVKRLGALKSLYLSGNHFSGDIPGDKFSGMLSLKKVHLAQNHLEGQIPWSLAELPRLLELRLEANHFSGQIPNFAQKTLKVFNVSGNEQLRGSIPRAFSNFDPSSFTGLHCLCGKPLDKPCTTSKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSSNEENPAHSKSPNASVSSPAIGSRSPDRGSSHGSVAGKRAAESAKLSFVRDDTERFDLSDLLKANAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITDHVEKGSLAVQLHGHQAVGQPAIDWPSRLKIIKGVAKGLRYLYAELPSLITPHGHLKSSNVLLQANFEPLLSDYGLIPVVNQEHAQELMVVYKSPEYTQLGRITKKTDVWSFGMLIFEILTGKFPASFLRQSKSGGEEEDLASWVKSIPEKEWIGQVLDKDMGPTKNSDGEITKLLKIAIACCESDFEKRMDLREVVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFAI 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11044069 11046553 - Cp4.1LG04g13490.1 Cpe04g01354 468916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01354 651 SUPERFAMILY L domain-like 32 229 - -
Cpe04g01354 651 Gene3D Phosphorylase Kinase; domain 1 309 417 - -
Cpe04g01354 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 629 - -
Cpe04g01354 651 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 11 629 - -
Cpe04g01354 651 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Cpe04g01354 651 Gene3D Transferase(Phosphotransferase) domain 1 418 637 - -
Cpe04g01354 651 MobiDBLite consensus disorder prediction 279 309 - -
Cpe04g01354 651 Pfam Protein tyrosine and serine/threonine kinase 346 615 IPR001245 GO:0004672|GO:0006468
Cpe04g01354 651 Gene3D Ribonuclease Inhibitor 26 120 IPR032675 -
Cpe04g01354 651 Gene3D Ribonuclease Inhibitor 121 247 IPR032675 -
Cpe04g01354 651 MobiDBLite consensus disorder prediction 279 317 - -
Cpe04g01354 651 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Cpe04g01354 651 SUPERFAMILY Protein kinase-like (PK-like) 346 617 IPR011009 -
Cpe04g01354 651 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00994 Cpe-Chr3:8138764 Cpe04g01354 Cpe-Chr4:11044069 0 dispersed
Cpe04g01354 Cpe-Chr4:11044069 Cpe18g00665 Cpe-Chr18:6710715 0 dispersed
Cpe04g01354 Cpe-Chr4:11044069 Cpe02g01768 Cpe-Chr2:14373468 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62373 PF07714 PK_Tyr_Ser-Thr 5.10E-31 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01354 - - csv:101213261 994.186