Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01365 ATGTCCCCTACAAAATTCCTACACTTCGGCACTGCAATCTCCCGAGCAACATCCAGATCTCTATCGCCACTCCTCTTCCCCAGAAGATTCTTCATCAAGTGCAGCTCTTCTACTACGCTAGATTCCGCCGGCGACGACGGCGTTGATGCGCCTCAACCACACTCCAGCCTCATTCACCACCCCTGGCCTGAATGGATTTCCTTTGTCGACGGCCTGAAGACCAAAGGTTACTTGATCGAACCTCCTTCGGAAGATGCAAACGGAGATGGGAGCAGTAGTGATGCAGTTTCGCCATCCGAGACTGATTACAGCGACATGAACGTGCTGAAGGATGCTTGCCTTAGCTTTGCACGCGACCGCCACGATATTCTAGAAGATGATATTCAAACGGTAATGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTCAATTCAGCTAAAAGGTTAAGGGCTTATGTTTGTAGTACTTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTATGAAGGAAACAGAAGCTGCAAGAACTGTGGATATAGCTAGAATATTGTTGGCCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGACAAAGCTTTGGGTAGAGAGCATGTCGAAGTCTCTATCAGGAAATTGCTTTCTGAGATATCTGAACTGAGTGAAGAACCCATTGAGGCAGCTGCAGCAGTGAAAGCTGATACAAAAACTCCATCAAGAAAAGAAAAGCCTTCAAAACTTACAAATGATGCATTGTCTAAAGATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCAAAGTGCAATTTTTTGAATTTTTCGAGAAACAAAAGATGTTTAAAATGCAAGGAAGAAGGTCCTAAAAGAGTTGGGGCAGATGATATAGAAATGAAGAGCGGAGATTGGATCTGCCCAGAGTGTAAATTCATGAACTTCTCAAGAAACATTCAGTGCTTAAAGTGCAAAAGCAAGAGGCGGAAGAAGATTAATAATGTTGATGAAATTGGAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTGAATTCATGAACTTTGCGAGTAAGAAGGAATGCTTGCGATGCCGAGAACGTCGTCCAAAGAGGGAGCTGAGTCCAGGAGAATGGGAATGCCCCTCACGGAACATGATGTGCCGCAACTGCAATTGTGAGCGCCCTAGACAAGAAATAAGTGCGGAGTACCAGGAACATCTATGGGAGTCACCCACGGAAAGATGA 1242 45.09 MSPTKFLHFGTAISRATSRSLSPLLFPRRFFIKCSSSTTLDSAGDDGVDAPQPHSSLIHHPWPEWISFVDGLKTKGYLIEPPSEDANGDGSSSDAVSPSETDYSDMNVLKDACLSFARDRHDILEDDIQTVMKDGCPNLFRKVVNSAKRLRAYVCSTCNLRGSCDRAYVIMKETEAARTVDIARILLAYALDPLVLSGGDKALGREHVEVSIRKLLSEISELSEEPIEAAAAVKADTKTPSRKEKPSKLTNDALSKDVEMKRGDWMCSKCNFLNFSRNKRCLKCKEEGPKRVGADDIEMKSGDWICPECKFMNFSRNIQCLKCKSKRRKKINNVDEIGMKKGDWICPQCEFMNFASKKECLRCRERRPKRELSPGEWECPSRNMMCRNCNCERPRQEISAEYQEHLWESPTER 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11106219 11110349 - Cp4.1LG04g13740.1 Cpe04g01365 468927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01365 413 ProSiteProfiles Zinc finger RanBP2 type profile. 300 329 IPR001876 -
Cpe04g01365 413 MobiDBLite consensus disorder prediction 237 253 - -
Cpe04g01365 413 PANTHER ASPARAGINE-RICH PROTEIN 330 408 - -
Cpe04g01365 413 MobiDBLite consensus disorder prediction 79 102 - -
Cpe04g01365 413 ProSiteProfiles Zinc finger RanBP2 type profile. 340 369 IPR001876 -
Cpe04g01365 413 MobiDBLite consensus disorder prediction 231 253 - -
Cpe04g01365 413 ProSiteProfiles Zinc finger RanBP2 type profile. 261 290 IPR001876 -
Cpe04g01365 413 SUPERFAMILY Ran binding protein zinc finger-like 337 369 IPR036443 -
Cpe04g01365 413 PANTHER ASPARAGINE-RICH PROTEIN 18 327 - -
Cpe04g01365 413 Pfam Zn-finger in Ran binding protein and others 300 327 IPR001876 -
Cpe04g01365 413 Pfam Zn-finger in Ran binding protein and others 262 285 IPR001876 -
Cpe04g01365 413 Pfam Zn-finger in Ran binding protein and others 340 363 IPR001876 -
Cpe04g01365 413 SMART zf_4 342 366 IPR001876 -
Cpe04g01365 413 SMART zf_4 302 326 IPR001876 -
Cpe04g01365 413 SMART zf_4 263 287 IPR001876 -
Cpe04g01365 413 ProSitePatterns Zinc finger RanBP2-type signature. 304 323 IPR001876 -
Cpe04g01365 413 MobiDBLite consensus disorder prediction 86 102 - -
Cpe04g01365 413 SUPERFAMILY Ran binding protein zinc finger-like 293 330 IPR036443 -
Cpe04g01365 413 Gene3D - 253 291 - -
Cpe04g01365 413 Gene3D - 332 370 - -
Cpe04g01365 413 Gene3D - 292 330 - -
Cpe04g01365 413 PANTHER ZINC FINGER PROTEIN 18 327 - -
Cpe04g01365 413 ProSitePatterns Zinc finger RanBP2-type signature. 344 363 IPR001876 -
Cpe04g01365 413 Coils Coil 205 225 - -
Cpe04g01365 413 PANTHER ZINC FINGER PROTEIN 330 408 - -
Cpe04g01365 413 SUPERFAMILY Ran binding protein zinc finger-like 256 288 IPR036443 -
Cpe04g01365 413 ProSitePatterns Zinc finger RanBP2-type signature. 265 284 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01365 - - - cmax:111497775 674.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01365 Cpe18g00873 CCT
Cpe04g01365 Cpe13g00350 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01365 Cpe-Chr4:11106219 Cpe13g00350 Cpe-Chr13:3516330 9.79E-60 dispersed
Cpe08g01376 Cpe-Chr8:9881900 Cpe04g01365 Cpe-Chr4:11106219 2.42E-17 transposed
Cpe18g00674 Cpe-Chr18:6784830 Cpe04g01365 Cpe-Chr4:11106219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01365 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0