Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01366 ATGAATCTGTCTTTTCTTGACTACTACGATGTACCATACAAAGTTGTCGAGGTCAATCCATTCAGTAAGAAAGAAATTAAGTGGTCGGAGTATAAGAAGGTGCCAATATTGGTGGTTGATGGCGAACAGCTGGTTGACTCCTCAGCCATAATCGACCAGTTGAGCCACAAGGCTTTGTTGGATAAGAATGCTTCTTCTGTCTCTGAAGAGGATGAAGAAACTAAGTGGCGTAGGGGGAGGGGAAGAGGGATTGACGATTGCTTATTAGGTAATTTTGGCTTTGCGGAGAAGACTACTGTAGAGTATGCTGGAGCCGCCGCTATGTATTGCATATCAAAGAAATGA 345 43.48 MNLSFLDYYDVPYKVVEVNPFSKKEIKWSEYKKVPILVVDGEQLVDSSAIIDQLSHKALLDKNASSVSEEDEETKWRRGRGRGIDDCLLGNFGFAEKTTVEYAGAAAMYCISKK 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11110105 11112186 + Cp4.1LG04g13700.1 Cpe04g01366 468928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01366 114 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 90 114 - -
Cpe04g01366 114 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 4 78 - -
Cpe04g01366 114 Gene3D Glutaredoxin 3 60 - -
Cpe04g01366 114 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 62 IPR004045 -
Cpe04g01366 114 SUPERFAMILY Thioredoxin-like 5 58 IPR036249 -
Cpe04g01366 114 Pfam Glutathione S-transferase, N-terminal domain 6 57 IPR004045 -
Cpe04g01366 114 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 90 114 - -
Cpe04g01366 114 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 4 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01366 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101221439 164.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01366 Cpe-Chr4:11110105 Cpe07g00352 Cpe-Chr7:2282500 1.12E-19 dispersed
Cpe18g00675 Cpe-Chr18:6788612 Cpe04g01366 Cpe-Chr4:11110105 2.03E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g197 . . Bda06g00822 Bda15g00512 Bpe12g00695 . . Bma12g01245 . . Cma10g00331 Cma11g00316 Car10g00313 Car11g00291 . . Cpe04g01366 Bhi02g00150 Tan09g1812 . . Hepe09g0396 . . Cla06g01416 Cam06g1569 Cec06g1629 Cco06g1621 Clacu06g1531 Cmu06g1485 Cre06g2294 . . . Cone19ag0335 . . . . Blo13g00171 Blo15g00058 . . Bpe07g01049 . . Bma08g00057 . Cmo10g00357 . . . . . . . . . . . . . . . . . . . . . Lsi06g01278 Csa01g00439 Chy02g02306 Cme02g01677
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01366 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0