Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01367 ATGGCGTCCAATTCTGCCAACCTTTGGGTCCTGTTGGGATTGGGTTTGGCTGGAATCCTGTTGATGACGAAAAAGCTTAAGAAAGCCATTAGAGAGGATTTTGGAGCGTTTATAGAGAAGCTTCAGCTACTTCCTCCTCCTCAGCCTGCTCCTCCTAAAGCCCCTCATCCCCTGACCGGTCTCACCTTCGCCGTTTCCGACGTATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAGAACACATGATGCAGCTTCTCGTACAGCTCCAATAGTTTCTGCACTTGTTGAAGGAGGAGCTACTTGCATCGGAAAAACTGTTGTCAGTGAACTGTCAATGGGCATCAGTGGAGAAAACAAGCATCATGGCACTCCCACTAATCCTGCATCACATTATACTGCTCCTGGTGGGTCGTCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATTTTGTTGACTTCTCTTTAGGCATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGACATTTTTGGGTTTCGACCTTCTCATGGATCTGTTTCCCAAGTTGGAATCATACCTGTATCAACAAGTCTTGACACCGTTGGATTGTTTGCTAGGGATCCTAATGTACTGCGCCGTGTTGGCCATGTGCTTTTGCAACTTCCATATGTTGGTCAACGCAATCCAAGACAAATTATTTTAGCTGATGATTGCTTTCAACTACTGAAGATACCTGTTGACAGGGTTACTCAGGCGGTGACCAAATCAACTGAGAACATTTTTGGCAAACAAGTATTGAAGCATGAAAATCTTGGAAGCTATTTGAGTTCTAAAGTTCCGAAATTGAAAGAGTTAATTGGGATAAAGACAAATGGCAATCTGAATTCTTCTTCAATTAGAGTGCTGGCCAATGTGATGCAGACTCTTGAAAGGATTGAGTTCAAAAGCAATCATGGGGAATGGATTGACTCGGTGAAGCCAGATTTGGATCCTGCTTTAATGGAGCAGTTAAATGAGAAGTTGGAGACATCAGATACAGTAATTGAAAACCTCAAGTCTGTTAGAAATGAAACCCGTATGGCTATTAATTCTCTTTTGAAGGTCACCTTGCCACTGGGATTTCATGATAAATGTCCTGTATCTGTATCCTTCTTAGCCAGGCATGGGGCAGATCGCTTTTTACTAGATACTGTACAAACCATGTACAAGTCTCTAAAAGAGGAGGCTGAGGCTGCTTCCAAAGCCAAATTCTCAAAGAATGCTATTAGCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGCAATCAAGCATATAAAGAAAAACAATGGGAGAAGGCTATTGGTTGTTACACTGAAGCCATCAAGCTCAACGGCAGAAATGCTACATATTACAGTAATAGGGCTGCAGCATATTTAGAACTTGGACGGTTTCACCAAGCAGAGGCTGATTGCAGTAAAGCTATTGACCTGGATAAAAAGAATGTTAAATCCTATTTACGGAGGGGTACAGCGAGAGAGATGCTTGGTTTTTACAAGGAAGCAATTGAAGATTTTAGTCATGCTCTTGTACTCGAACCAACAAACAAAAGAGCGTCGATATCTGCCGAGAGATTAAGAAAGCTATTCACAAGTTGA 1641 42.78 MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKLQLLPPPQPAPPKAPHPLTGLTFAVSDVFEIEGHVTGFGHPDWARTHDAASRTAPIVSALVEGGATCIGKTVVSELSMGISGENKHHGTPTNPASHYTAPGGSSSGAAVAVAANFVDFSLGIDTVGDVRIPASFCDIFGFRPSHGSVSQVGIIPVSTSLDTVGLFARDPNVLRRVGHVLLQLPYVGQRNPRQIILADDCFQLLKIPVDRVTQAVTKSTENIFGKQVLKHENLGSYLSSKVPKLKELIGIKTNGNLNSSSIRVLANVMQTLERIEFKSNHGEWIDSVKPDLDPALMEQLNEKLETSDTVIENLKSVRNETRMAINSLLKVTLPLGFHDKCPVSVSFLARHGADRFLLDTVQTMYKSLKEEAEAASKAKFSKNAISQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNGRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLFTS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11114105 11121444 + Cp4.1LG04g13640.1 Cpe04g01367 468929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01367 546 MobiDBLite consensus disorder prediction 121 140 - -
Cpe04g01367 546 Coils Coil 335 355 - -
Cpe04g01367 546 PANTHER AMIDASE 1 368 545 - -
Cpe04g01367 546 PANTHER AMIDASE 1 1 368 - -
Cpe04g01367 546 MobiDBLite consensus disorder prediction 124 140 - -
Cpe04g01367 546 SUPERFAMILY Amidase signature (AS) enzymes 56 399 IPR036928 -
Cpe04g01367 546 Gene3D Tetratricopeptide repeat domain 395 544 IPR011990 GO:0005515
Cpe04g01367 546 Pfam Amidase 55 218 IPR023631 -
Cpe04g01367 546 Pfam TPR repeat 436 477 - -
Cpe04g01367 546 ProSiteProfiles TPR repeat profile. 497 530 IPR019734 GO:0005515
Cpe04g01367 546 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 368 545 - -
Cpe04g01367 546 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 368 - -
Cpe04g01367 546 Gene3D Amidase signature (AS) domain 48 369 IPR036928 -
Cpe04g01367 546 SUPERFAMILY TPR-like 427 533 IPR011990 GO:0005515
Cpe04g01367 546 Coils Coil 396 416 - -
Cpe04g01367 546 ProSiteProfiles TPR repeat profile. 463 496 IPR019734 GO:0005515
Cpe04g01367 546 SMART tpr_5 429 462 IPR019734 GO:0005515
Cpe04g01367 546 SMART tpr_5 497 530 IPR019734 GO:0005515
Cpe04g01367 546 SMART tpr_5 463 496 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01367 - - - csv:101221204 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01349 Cpe-Chr3:10937589 Cpe04g01367 Cpe-Chr4:11114105 5.58E-12 dispersed
Cpe04g01367 Cpe-Chr4:11114105 Cpe15g00225 Cpe-Chr15:2045580 0 dispersed
Cpe04g01367 Cpe-Chr4:11114105 Cpe18g00675 Cpe-Chr18:6788612 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01367 Cpe_Chr04 FPKM 0.0 0.0 0.180728 0.142066 0.0 0.0 0.0 0.563447 0.634443 0.871472