Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01368 ATGCCGGATACTCCATCGTCGCCAAAGACCGGTGGTCGGTTGGTGTTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGCAGCGATCCTTATGTTGTCATCAAGATGGGAAAGCAAAAATTGAAGACACGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACACTTTCTGTCAGTGACCCGAATATTCCCATTAAGCTGACTGTTTACGACCACGACAAATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTTGATATCAAATCATTTATAGAAGCTCAAAAGATGAACTTGAAAAATCTTCCTAGTGGAACGACAATCTCACGAACGCTACCGGGCAGGCACAACTGTTTTGCTGAAGAGAGCTGCGTCATCTGGAAAGACGGTCAAGTTATCCAAGATATATACCTTAGACTGAAAAGGGTCGAATGCGGAGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCCCAAAGGTTAA 543 43.65 MPDTPSSPKTGGRLVLMENLLGLLRIRVIRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNIPIKLTVYDHDKFSKDDKMGYAEFDIKSFIEAQKMNLKNLPSGTTISRTLPGRHNCFAEESCVIWKDGQVIQDIYLRLKRVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11123228 11126212 + Cp4.1LG04g13650.1 Cpe04g01368 468930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01368 180 CDD C2_ArfGAP 21 164 - -
Cpe04g01368 180 Gene3D C2 domain 18 179 IPR035892 -
Cpe04g01368 180 Pfam C2 domain 22 113 IPR000008 -
Cpe04g01368 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 11 179 - -
Cpe04g01368 180 SMART C2_3c 23 118 IPR000008 -
Cpe04g01368 180 ProSiteProfiles C2 domain profile. 5 119 IPR000008 -
Cpe04g01368 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cpe04g01368 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 179 IPR044562 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01844 Cpe04g01368 CCT
Cpe01g01844 Cpe04g01368 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01368 Cpe-Chr4:11123228 Cpe19g01173 Cpe-Chr19:7898767 2.26E-40 dispersed
Cpe09g00639 Cpe-Chr9:4810359 Cpe04g01368 Cpe-Chr4:11123228 1.19E-37 dispersed
Cpe20g00665 Cpe-Chr20:4373327 Cpe04g01368 Cpe-Chr4:11123228 6.67E-14 dispersed
Cpe18g00677 Cpe-Chr18:6805030 Cpe04g01368 Cpe-Chr4:11123228 2.84E-106 wgd
Cpe20g00153 Cpe-Chr20:872328 Cpe04g01368 Cpe-Chr4:11123228 7.46E-19 wgd
Cpe04g01368 Cpe-Chr4:11123228 Cpe09g01112 Cpe-Chr9:9578261 1.24E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01368 - - csv:101220972 304.293