Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01371 ATGTGGACTTTGGGACATGACGATAATGGTGCACAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTCCACAATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGATAATGGTTTATCTTCTCCACCGGTAACGGTAAGCTCGTCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACACGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCTCAGCTCCGCCGCTTTGGCAAAATTGAAGGCAAAAATGTGTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGGCGTCAAACGGCCGCTGAAGAACACAAATATTCAGACACAGAAAAAGGGTACGAAATTGAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATACCACACTTTCACAGGAATGTGCAAAAATCCAAAGAACAACAAAAGTAGTGGAATTGGAAGAAGAAGAAGAAGAAGAAAGGAGAAGAGATGGAACATGGAATAATGACACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAAACAGTGTCATCGAACCCTGCAACGATCCAACACGATACAATATTGTTAACGATGACGAGGAATCTGAGACGACGACGCTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCGAGAATGAGAACGAAAGGGAGGAACGACAAGACGATCGGCTGGATTCGAACATGATCAGGAGCTCGACGTCCACATTTTCTCCCGGTTGTTTCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA 951 46.48 MWTLGHDDNGAQFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPPQYYHLANLLNDQSKRELLNNDDNGLSSPPVTVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSDTEKGYEIEQTKTNRPRPTPPPSNLCSNTTLSQECAKIQRTTKVVELEEEEEEERRRDGTWNNDTVNCQLINLTRNTRHLNSVIEPCNDPTRYNIVNDDEESETTTLQLFPLSSMKYCKYESENENEREERQDDRLDSNMIRSSTSTFSPGCFKFFEFLPLKN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11141487 11144903 - Cp4.1LG04g13710.1 Cpe04g01371 468933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01371 316 ProSiteProfiles 'Homeobox' domain profile. 75 140 IPR001356 GO:0003677
Cpe04g01371 316 MobiDBLite consensus disorder prediction 141 164 - -
Cpe04g01371 316 CDD homeodomain 81 141 IPR001356 GO:0003677
Cpe04g01371 316 MobiDBLite consensus disorder prediction 137 181 - -
Cpe04g01371 316 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 316 - -
Cpe04g01371 316 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
Cpe04g01371 316 SMART HOX_1 77 144 IPR001356 GO:0003677
Cpe04g01371 316 MobiDBLite consensus disorder prediction 62 82 - -
Cpe04g01371 316 Gene3D - 75 140 - -
Cpe04g01371 316 Pfam Homeodomain 79 139 IPR001356 GO:0003677
Cpe04g01371 316 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 316 IPR044555 GO:0003700|GO:0099402
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01371 Cpe09g01115 CCT
Cpe04g01371 Cpe09g01115 ECH
Cpe04g01371 Cpe20g00149 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01371 Cpe-Chr4:11141487 Cpe07g00494 Cpe-Chr7:3226239 6.08E-31 dispersed
Cpe14g01056 Cpe-Chr14:8820899 Cpe04g01371 Cpe-Chr4:11141487 2.13E-15 dispersed
Cpe20g00149 Cpe-Chr20:844047 Cpe04g01371 Cpe-Chr4:11141487 6.96E-51 wgd
Cpe04g01371 Cpe-Chr4:11141487 Cpe09g01115 Cpe-Chr9:9602444 3.27E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49425 PF00046 Homeodomain 1.00E-19 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01371 - - csv:105434593 333.954