Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01371 | ATGTGGACTTTGGGACATGACGATAATGGTGCACAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTCCACAATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGATAATGGTTTATCTTCTCCACCGGTAACGGTAAGCTCGTCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACACGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCTCAGCTCCGCCGCTTTGGCAAAATTGAAGGCAAAAATGTGTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGGCGTCAAACGGCCGCTGAAGAACACAAATATTCAGACACAGAAAAAGGGTACGAAATTGAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATACCACACTTTCACAGGAATGTGCAAAAATCCAAAGAACAACAAAAGTAGTGGAATTGGAAGAAGAAGAAGAAGAAGAAAGGAGAAGAGATGGAACATGGAATAATGACACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAAACAGTGTCATCGAACCCTGCAACGATCCAACACGATACAATATTGTTAACGATGACGAGGAATCTGAGACGACGACGCTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCGAGAATGAGAACGAAAGGGAGGAACGACAAGACGATCGGCTGGATTCGAACATGATCAGGAGCTCGACGTCCACATTTTCTCCCGGTTGTTTCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA | 951 | 46.48 | MWTLGHDDNGAQFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPPQYYHLANLLNDQSKRELLNNDDNGLSSPPVTVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSDTEKGYEIEQTKTNRPRPTPPPSNLCSNTTLSQECAKIQRTTKVVELEEEEEEERRRDGTWNNDTVNCQLINLTRNTRHLNSVIEPCNDPTRYNIVNDDEESETTTLQLFPLSSMKYCKYESENENEREERQDDRLDSNMIRSSTSTFSPGCFKFFEFLPLKN | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11141487 | 11144903 | - | Cp4.1LG04g13710.1 | Cpe04g01371 | 468933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01371 | 316 | ProSiteProfiles | 'Homeobox' domain profile. | 75 | 140 | IPR001356 | GO:0003677 | |
Cpe04g01371 | 316 | MobiDBLite | consensus disorder prediction | 141 | 164 | - | - | |
Cpe04g01371 | 316 | CDD | homeodomain | 81 | 141 | IPR001356 | GO:0003677 | |
Cpe04g01371 | 316 | MobiDBLite | consensus disorder prediction | 137 | 181 | - | - | |
Cpe04g01371 | 316 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 52 | 316 | - | - | |
Cpe04g01371 | 316 | SUPERFAMILY | Homeodomain-like | 76 | 144 | IPR009057 | - | |
Cpe04g01371 | 316 | SMART | HOX_1 | 77 | 144 | IPR001356 | GO:0003677 | |
Cpe04g01371 | 316 | MobiDBLite | consensus disorder prediction | 62 | 82 | - | - | |
Cpe04g01371 | 316 | Gene3D | - | 75 | 140 | - | - | |
Cpe04g01371 | 316 | Pfam | Homeodomain | 79 | 139 | IPR001356 | GO:0003677 | |
Cpe04g01371 | 316 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 52 | 316 | IPR044555 | GO:0003700|GO:0099402 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01371 | Cpe09g01115 | CCT | |
Cpe04g01371 | Cpe09g01115 | ECH | |
Cpe04g01371 | Cpe20g00149 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01371 | Cpe-Chr4:11141487 | Cpe07g00494 | Cpe-Chr7:3226239 | 6.08E-31 | dispersed | |
Cpe14g01056 | Cpe-Chr14:8820899 | Cpe04g01371 | Cpe-Chr4:11141487 | 2.13E-15 | dispersed | |
Cpe20g00149 | Cpe-Chr20:844047 | Cpe04g01371 | Cpe-Chr4:11141487 | 6.96E-51 | wgd | |
Cpe04g01371 | Cpe-Chr4:11141487 | Cpe09g01115 | Cpe-Chr9:9602444 | 3.27E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49425 | PF00046 | Homeodomain | 1.00E-19 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01371 | - | - | csv:105434593 | 333.954 |