Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01378 ATGGTTACGGCTGTGCCGCCCATCTCGGTGGCTGCGGAGACCGATCATGCTCTCCGTCGACCTCGCGGGCGGCCAGCCGGGTCCAAGAACAAGCCCAAACCCCCCATTATTGTTACCCGAGATAGCGCTAATGCTCTCCGGGCTCATGCCATTGAGGTTAGCTCTGGTTGTGATGTCAATGAGAGTCTCTCTAGCTTCGCTCGAAGGAAGCAGCGTGGCGTTTGTATTCTTAGTGGAAGTGGTTGTGTTGTTAATGTCACACTTCGTCAAGCTGCTTCCTCGGGCGCCATTATCGTTTCATTATTGGGATCGATCTTGCCACCGCCAGCACCGTTGGGGATCACCGGTCTGACAATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGTGGGGTCGTGGTGGGCGCGCTCATTGCCTCCGGCCCCGTTGTGATCATGGCAGCGACGTTCATGAACGCGACATTTGACCGTCTGCCATCGGACGACGACGAAGTGACAGCCGCCATGCATAGTCAACACTACGGCCAAAATGGGCGGAGCCACCACCACCTTGATGTTTCTGATCTGTATGGAACGCCACAGAACTTGATCACCAACAGCACTCTTCCGCCGGAATTATACTCTTGA 627 55.98 MVTAVPPISVAAETDHALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSSFARRKQRGVCILSGSGCVVNVTLRQAASSGAIIVSLLGSILPPPAPLGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDDEVTAAMHSQHYGQNGRSHHHLDVSDLYGTPQNLITNSTLPPELYS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11179503 11180707 + Cp4.1LG04g13830.1 Cpe04g01378 468940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01378 208 PIRSF ESCAROLA 4 202 IPR014476 GO:0003680
Cpe04g01378 208 CDD DUF296 47 121 IPR005175 -
Cpe04g01378 208 Pfam Plants and Prokaryotes Conserved (PCC) domain 47 151 IPR005175 -
Cpe04g01378 208 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 208 IPR014476 GO:0003680
Cpe04g01378 208 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 11 208 - -
Cpe04g01378 208 MobiDBLite consensus disorder prediction 12 35 - -
Cpe04g01378 208 SUPERFAMILY AF0104/ALDC/Ptd012-like 43 166 - -
Cpe04g01378 208 ProSiteProfiles PPC domain profile profile. 43 173 IPR005175 -
Cpe04g01378 208 Gene3D - 46 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01378 Cpe-Chr4:11179503 Cpe05g00278 Cpe-Chr5:1565555 1.16E-56 dispersed
Cpe18g00682 Cpe-Chr18:6828702 Cpe04g01378 Cpe-Chr4:11179503 1.05E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01378 - - csv:101219306 353.599