Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01384 ATGGCAGAGGTAAAGATTATTGGGTCAGCTGCAAGCCTCTTCTCTGTAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTATGAGTACATACCTGAAGACGTGAGAAACAAAAGTGAGCTGCTTCTCAAGTCCAACCCTGTGCACAAAAAAATACCTGTGCTCTTGCACCATGGCAAACCCATCTCCGAGTCGCTTCTCATCCTCGAATACATCGACGAGACGTGGAAGGACAACCCGCTCATGCCTGAAGATCCATATAACAGAGCCATGGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCCTGCTGGGTGCCTGGGAAGCATGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAATACAGAATTTGGCATTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGTGGAGATAAGATTGGTTACCTGGATTTAGCTGCAGGGTGGATGTGCCACTGGCTCAGTGTTCTTGATGAAGTTGGAGAAATGAAGGTGTTTGATAAAGACAGGGTCCCATCCCTTCATGAATGGGTTCAAGACTTCGTACACATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAGATCTTGTCACCTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCGTTAGCTGCAAATAAGCAA 672 47.32 MAEVKIIGSAASLFSVRVEWALKLKGIEYEYIPEDVRNKSELLLKSNPVHKKIPVLLHHGKPISESLLILEYIDETWKDNPLMPEDPYNRAMARFWAKFLDEKGLLGAWEACQAEGEEKEKAVEAAIQNLALLDKEIQGKKFFGGDKIGYLDLAAGWMCHWLSVLDEVGEMKVFDKDRVPSLHEWVQDFVHIPVIKESLPPREDLVTYFKGSLSYVRSLAANKQ 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11205731 11207383 - Cp4.1LG04g13870.1 Cpe04g01384 468946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01384 224 SFLD Main.3: Omega- and Tau-like 1 216 IPR045073 -
Cpe04g01384 224 CDD GST_N_Tau 4 77 - -
Cpe04g01384 224 Gene3D - 86 217 - -
Cpe04g01384 224 Gene3D Glutaredoxin 1 85 - -
Cpe04g01384 224 CDD GST_C_Tau 87 211 IPR045074 GO:0004364|GO:0006749
Cpe04g01384 224 Pfam Glutathione S-transferase, C-terminal domain 118 187 - -
Cpe04g01384 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 221 IPR045073 -
Cpe04g01384 224 SFLD Main (cytGST) 1 216 - -
Cpe04g01384 224 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cpe04g01384 224 PANTHER GLUTATHIONE S-TRANSFERASE 1 221 - -
Cpe04g01384 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cpe04g01384 224 SUPERFAMILY GST C-terminal domain-like 75 211 IPR036282 -
Cpe04g01384 224 Pfam Glutathione S-transferase, N-terminal domain 13 75 IPR004045 -
Cpe04g01384 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 209 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01384 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101217418 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01661 Cpe-Chr3:12702035 Cpe04g01384 Cpe-Chr4:11205731 1.06E-42 dispersed
Cpe03g01662 Cpe-Chr3:12704731 Cpe04g01384 Cpe-Chr4:11205731 2.20E-73 dispersed
Cpe04g01384 Cpe-Chr4:11205731 Cpe10g00926 Cpe-Chr10:5174956 3.83E-64 dispersed
Cpe04g01384 Cpe-Chr4:11205731 Cpe10g00921 Cpe-Chr10:5149237 8.69E-63 transposed
Cpe04g01384 Cpe-Chr4:11205731 Cpe19g00327 Cpe-Chr19:2839956 7.53E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g253 . . . . . . . . . . . . . . . . Cpe04g01384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01703
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01384 Cpe_Chr04 FPKM 0.938411 1.197473 4.410921 4.799647 13.786489 13.091885 13.908488 8.79137 8.27247 9.121257