Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01385 | ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGCGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCTGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGTCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTTCTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATGTAAAGCTGATAAGCTTGATGACCATGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA | 1251 | 41.57 | MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNACKADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11207918 | 11212437 | + | Cp4.1LG04g13780.1 | Cpe04g01385 | 468947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01385 | 416 | MobiDBLite | consensus disorder prediction | 384 | 416 | - | - | |
Cpe04g01385 | 416 | CDD | STKc_CDK7 | 13 | 307 | IPR037770 | GO:0005675|GO:0008353|GO:0070985 | |
Cpe04g01385 | 416 | PANTHER | CELL DIVISION PROTEIN KINASE | 9 | 360 | - | - | |
Cpe04g01385 | 416 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 310 | - | - | |
Cpe04g01385 | 416 | MobiDBLite | consensus disorder prediction | 294 | 342 | - | - | |
Cpe04g01385 | 416 | SUPERFAMILY | Protein kinase-like (PK-like) | 10 | 301 | IPR011009 | - | |
Cpe04g01385 | 416 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe04g01385 | 416 | Pfam | Protein kinase domain | 16 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01385 | 416 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 44 | IPR017441 | GO:0005524 | |
Cpe04g01385 | 416 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 94 | - | - | |
Cpe04g01385 | 416 | MobiDBLite | consensus disorder prediction | 317 | 332 | - | - | |
Cpe04g01385 | 416 | PANTHER | CYCLIN-DEPENDENT KINASE D-2 | 9 | 360 | - | - | |
Cpe04g01385 | 416 | ProSiteProfiles | Protein kinase domain profile. | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe04g01385 | 416 | MobiDBLite | consensus disorder prediction | 401 | 416 | - | - | |
Cpe04g01385 | 416 | SMART | serkin_6 | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01385 | Cpe11g00617 | CCT | |
Cpe04g01385 | Cpe07g00755 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01385 | Cpe-Chr4:11207918 | Cpe09g00576 | Cpe-Chr9:3977814 | 4.28E-78 | dispersed | |
Cpe17g01052 | Cpe-Chr17:7956282 | Cpe04g01385 | Cpe-Chr4:11207918 | 1.08E-12 | dispersed | |
Cpe04g01385 | Cpe-Chr4:11207918 | Cpe18g00688 | Cpe-Chr18:6860425 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62376 | PF00069 | Pkinase | 2.90E-72 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01385 | K02202 | - | csv:101217645 | 794.267 |