Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01385 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGCGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCTGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGTCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTTCTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATGTAAAGCTGATAAGCTTGATGACCATGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 41.57 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNACKADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11207918 11212437 + Cp4.1LG04g13780.1 Cpe04g01385 468947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01385 416 MobiDBLite consensus disorder prediction 384 416 - -
Cpe04g01385 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cpe04g01385 416 PANTHER CELL DIVISION PROTEIN KINASE 9 360 - -
Cpe04g01385 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cpe04g01385 416 MobiDBLite consensus disorder prediction 294 342 - -
Cpe04g01385 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cpe04g01385 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cpe04g01385 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01385 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cpe04g01385 416 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Cpe04g01385 416 MobiDBLite consensus disorder prediction 317 332 - -
Cpe04g01385 416 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 360 - -
Cpe04g01385 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g01385 416 MobiDBLite consensus disorder prediction 401 416 - -
Cpe04g01385 416 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01385 Cpe11g00617 CCT
Cpe04g01385 Cpe07g00755 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01385 Cpe-Chr4:11207918 Cpe09g00576 Cpe-Chr9:3977814 4.28E-78 dispersed
Cpe17g01052 Cpe-Chr17:7956282 Cpe04g01385 Cpe-Chr4:11207918 1.08E-12 dispersed
Cpe04g01385 Cpe-Chr4:11207918 Cpe18g00688 Cpe-Chr18:6860425 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62376 PF00069 Pkinase 2.90E-72 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01385 K02202 - csv:101217645 794.267